Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36432H Brassica oleracea HOM05D007738 ORTHO05D010100 4.9e-276 954.1 587 100.0
BolC7t41290H Brassica oleracea HOM05D007738 ORTHO05D010100 1.4e-137 494.2 482 67.4
BolC9t56568H Brassica oleracea HOM05D007738 ORTHO05D010100 3.8e-135 486.1 562 60.0
BolC7t41522H Brassica oleracea HOM05D007738 ORTHO05D010100 3.4e-104 383.3 307 74.3
BolC8t47578H Brassica oleracea HOM05D007738 ORTHO05D010100 2.9e-103 380.2 409 67.0
BolC5t32813H Brassica oleracea HOM05D007738 ORTHO05D010100 4.0e-84 316.6 287 77.0
BolC5t32812H Brassica oleracea HOM05D007738 ORTHO05D039066 8.5e-79 298.9 278 72.3
BolC9t56857H Brassica oleracea HOM05D007738 ORTHO05D010100 3.6e-77 293.5 230 67.8
BolC8t47745H Brassica oleracea HOM05D007738 ORTHO05D010100 7.5e-75 285.8 334 53.0
BolC2t12022H Brassica oleracea HOM05D007738 ORTHO05D010100 5.4e-73 279.6 262 74.0
BolC9t56634H Brassica oleracea HOM05D007738 ORTHO05D010100 2.5e-70 270.8 302 58.3
BcaC05g28056 Brassica carinata HOM05D007738 ORTHO05D039066 2.8e-69 267.3 236 80.1
BolC7t42648H Brassica oleracea HOM05D007738 ORTHO05D010100 6.1e-69 266.2 271 71.2
BolC6t36842H Brassica oleracea HOM05D007738 ORTHO05D010100 1.4e-65 255.0 219 63.9
BolC1t04286H Brassica oleracea HOM05D007738 ORTHO05D010100 4.6e-64 250.0 236 60.6
BolC9t57047H Brassica oleracea HOM05D007738 ORTHO05D010100 1.3e-63 248.4 340 48.5
BolC2t11375H Brassica oleracea HOM05D007738 ORTHO05D010100 1.6e-56 224.9 158 88.0
BolC8t47983H Brassica oleracea HOM05D007738 ORTHO05D010100 3.4e-51 207.2 277 62.5
BolC5t32811H Brassica oleracea HOM05D007738 ORTHO05D010100 7.5e-51 206.1 180 62.2
BraSC39t46177Z Brassica rapa HOM05D007738 ORTHO05D010100 2.4e-49 201.1 146 73.3
BolC5t33754H Brassica oleracea HOM05D007738 ORTHO05D010100 2.7e-48 197.6 322 48.1
BolC9t57038H Brassica oleracea HOM05D007738 ORTHO05D010100 7.8e-48 196.1 249 57.4
BraA01t02293Z Brassica rapa HOM05D007738 ORTHO05D010100 2.1e-45 188.0 263 49.8
BcaC04g20883 Brassica carinata HOM05D007738 ORTHO05D010100 2.8e-45 187.6 183 65.6
BolC5t33457H Brassica oleracea HOM05D007738 ORTHO05D010100 1.2e-43 182.2 226 48.7
BolC7t41644H Brassica oleracea HOM05D007738 ORTHO05D010100 2.6e-43 181.0 192 66.7
BolC2t09309H Brassica oleracea HOM05D007738 ORTHO05D010100 9.9e-43 179.1 501 31.9
BolC1t02452H Brassica oleracea HOM05D007738 ORTHO05D010100 8.4e-42 176.0 169 59.8
BolC4t24734H Brassica oleracea HOM05D007738 ORTHO05D010100 1.9e-41 174.9 156 59.0
BolC1t02451H Brassica oleracea HOM05D007738 ORTHO05D010100 7.8e-40 169.5 107 80.4
BolC6t37031H Brassica oleracea HOM05D007738 ORTHO05D010100 7.8e-40 169.5 191 53.4
BolC7t42014H Brassica oleracea HOM05D007738 ORTHO05D010100 8.6e-39 166.0 146 59.6
BolC9t57037H Brassica oleracea HOM05D007738 ORTHO05D010100 6.9e-36 156.4 108 70.4
BolC2t10544H Brassica oleracea HOM05D007738 ORTHO05D010100 5.8e-35 153.3 101 73.3
BraA08t32909Z Brassica rapa HOM05D007738 ORTHO05D010100 3.8e-34 150.6 235 43.4
BolC4t25313H Brassica oleracea HOM05D007738 ORTHO05D010100 4.2e-33 147.1 199 56.8
BolC2t10543H Brassica oleracea HOM05D007738 ORTHO05D010100 9.3e-33 146.0 157 75.2
BcaC08g45128 Brassica carinata HOM05D007738 ORTHO05D010100 1.3e-31 142.1 86 77.9
BolC6t36843H Brassica oleracea HOM05D007738 ORTHO05D010100 1.7e-31 141.7 135 77.8
BolC8t47429H Brassica oleracea HOM05D007738 ORTHO05D010100 2.3e-31 141.4 158 50.6
BolC6t35181H Brassica oleracea HOM05D007738 ORTHO05D040815 5.1e-31 140.2 345 36.8
BolC6t36534H Brassica oleracea HOM05D007738 ORTHO05D010100 3.6e-29 134.0 74 90.5
BolC6t36387H Brassica oleracea HOM05D007738 ORTHO05D010100 9.0e-28 129.4 107 67.3
BcaC09g49633 Brassica carinata HOM05D007738 ORTHO05D010100 2.9e-26 124.4 162 45.1
A08p09070 Brassica napus HOM05D007738 ORTHO05D010100 4.6e-24 117.1 101 58.4
BcaC09g49634 Brassica carinata HOM05D007738 ORTHO05D010100 6.0e-24 116.7 158 43.7
BcaB05g22910 Brassica carinata HOM05D007738 ORTHO05D010100 1.1e-22 112.5 106 55.7
BolC7t41394H Brassica oleracea HOM05D007738 ORTHO05D010100 1.5e-22 112.1 66 84.8
BolC5t32356H Brassica oleracea HOM05D007738 ORTHO05D010100 3.3e-22 110.9 78 75.6
BcaB03g16236 Brassica carinata HOM05D007738 ORTHO05D010100 4.3e-22 110.5 81 67.9
BolC2t10358H Brassica oleracea HOM05D007738 ORTHO05D010100 9.6e-22 109.4 77 67.5
BcaC04g20740 Brassica carinata HOM05D007738 ORTHO05D010100 1.3e-21 109.0 89 60.7
BolC7t41435H Brassica oleracea HOM05D007738 ORTHO05D010100 2.8e-21 107.8 63 85.7
BcaB05g23715 Brassica carinata HOM05D007738 ORTHO05D010100 8.1e-21 106.3 104 53.8
BraA05t21168Z Brassica rapa HOM05D007738 ORTHO05D010100 2.0e-19 101.7 138 41.3
BolC6t36388H Brassica oleracea HOM05D007738 ORTHO05D010100 3.4e-19 100.9 84 56.0
BolC2t10344H Brassica oleracea HOM05D007738 ORTHO05D010100 5.8e-19 100.1 207 38.6
BraSC37t46127Z Brassica rapa HOM05D000029 ORTHO05D005879 6.4e-18 96.7 143 48.3
BolC2t11374H Brassica oleracea HOM05D007738 ORTHO05D010100 8.4e-18 96.3 73 65.8
BolC4t24126H Brassica oleracea HOM05D007738 ORTHO05D010100 8.4e-18 96.3 80 67.5
BcaC04g20864 Brassica carinata HOM05D007738 ORTHO05D010100 1.0e-15 89.4 52 90.4
BolC3t19103H Brassica oleracea HOM05D007738 ORTHO05D010100 1.0e-15 89.4 77 57.1
BcaB06g26991 Brassica carinata HOM05D007738 ORTHO05D010100 5.1e-15 87.0 84 54.8
BolC4t25314H Brassica oleracea HOM05D007738 ORTHO05D010100 1.6e-13 82.0 43 90.7
BcaC06g35966 Brassica carinata HOM05D007738 ORTHO05D010100 2.8e-13 81.3 76 53.9
BolC9t54940H Brassica oleracea HOM05D027559 ORTHO05D027977 1.1e-12 79.3 73 52.1
BcaC06g35974 Brassica carinata HOM05D007738 ORTHO05D010100 2.4e-12 78.2 137 54.7
BolC7t41342H Brassica oleracea HOM05D007738 ORTHO05D010100 4.0e-12 77.4 50 82.0
BolC2t10268H Brassica oleracea HOM05D007738 ORTHO05D010100 3.4e-11 74.3 180 47.8
BcaC01g01904 Brassica carinata HOM05D000014 ORTHO05D000016 1.3e-10 72.4 74 45.9
TWI63G1826 Tripterygium wilfordii HOM05D000014 ORTHO05D000093 3.8e-10 70.9 100 39.0
BolC5t32173H Brassica oleracea HOM05D007738 ORTHO05D010100 6.5e-10 70.1 51 74.5
BcaB01g01275 Brassica carinata HOM05D007738 ORTHO05D010100 8.4e-10 69.7 53 67.9
BolC7t41341H Brassica oleracea HOM05D007738 ORTHO05D010100 1.4e-09 68.9 56 58.9
TWI36G0746 Tripterygium wilfordii HOM05D000014 ORTHO05D000093 1.9e-09 68.6 100 38.0
Ca_23138_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 3.2e-09 67.8 120 33.3
BraA08t32616Z Brassica rapa HOM05D007738 ORTHO05D010100 4.2e-09 67.4 122 41.8
BraA09t38669Z Brassica rapa HOM05D007738 ORTHO05D010100 4.2e-09 67.4 54 57.4
Manes.12G095501 Manihot esculenta HOM05D000014 ORTHO05D000016 4.2e-09 67.4 103 34.0
VMungo0251G1094 Vigna mungo HOM05D000004 ORTHO05D000016 5.5e-09 67.0 79 39.2
BcaC05g28050 Brassica carinata HOM05D000014 ORTHO05D000016 9.3e-09 66.2 78 42.3
VMungo0720G1022 Vigna mungo HOM05D000014 ORTHO05D000016 9.3e-09 66.2 72 41.7
Manes.02G221020 Manihot esculenta HOM05D000014 ORTHO05D000016 1.2e-08 65.9 103 34.0
BcaC06g35965 Brassica carinata HOM05D000014 ORTHO05D000016 1.6e-08 65.5 107 37.4
Aa31sc155G20 Aethionema arabicum HOM05D000014 ORTHO05D000016 3.5e-08 64.3 83 38.6
TWI15G0694 Tripterygium wilfordii HOM05D000014 ORTHO05D000016 4.6e-08 63.9 81 37.0
Manes.06G029160 Manihot esculenta HOM05D000014 ORTHO05D000016 7.9e-08 63.2 103 33.0
TWI77G0341 Tripterygium wilfordii HOM05D000014 ORTHO05D000093 7.9e-08 63.2 104 34.6
BcaC06g34923 Brassica carinata HOM05D000014 ORTHO05D000016 1.3e-07 62.4 78 41.0
Aa31sc12G50 Aethionema arabicum HOM05D000014 ORTHO05D000016 1.8e-07 62.0 105 30.5
CARHR105060 Cardamine hirsuta HOM05D000014 ORTHO05D000016 1.8e-07 62.0 103 29.1
Ca_19559_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 1.8e-07 62.0 120 32.5
Manes.08G086511 Manihot esculenta HOM05D000014 ORTHO05D000016 1.8e-07 62.0 103 33.0
BcaC07g37483 Brassica carinata HOM05D007738 ORTHO05D010100 2.3e-07 61.6 40 80.0
Ca_03019_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 2.3e-07 61.6 119 31.1
BcaB07g33244 Brassica carinata HOM05D000014 ORTHO05D000016 3.0e-07 61.2 107 33.6
Ca_23063_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 3.0e-07 61.2 72 37.5
Manes.02G026950 Manihot esculenta HOM05D000014 ORTHO05D000016 3.0e-07 61.2 103 32.0
BcaB07g33921 Brassica carinata HOM05D000014 ORTHO05D000016 5.1e-07 60.5 105 36.2
TPR.G21512 Trifolium pratense HOM05D000014 ORTHO05D000016 5.1e-07 60.5 120 28.3
Aa31sc1048G10 Aethionema arabicum HOM05D011547 ORTHO05D000016 6.7e-07 60.1 82 34.1
BcaB08g35441 Brassica carinata HOM05D007738 ORTHO05D010100 6.7e-07 60.1 54 64.8
BolC5t32970H Brassica oleracea HOM05D007738 ORTHO05D010100 6.7e-07 60.1 48 58.3
Aa31LG2G17350 Aethionema arabicum HOM05D011547 ORTHO05D000016 8.7e-07 59.7 82 32.9
PGR031G2305 Punica granatum HOM05D000014 ORTHO05D000093 8.7e-07 59.7 72 34.7
PGR042G0019 Punica granatum HOM05D000014 ORTHO05D000093 8.7e-07 59.7 72 34.7
PGR042G2040 Punica granatum HOM05D000014 ORTHO05D000093 8.7e-07 59.7 72 34.7
PGR119G1452 Punica granatum HOM05D000014 ORTHO05D000093 8.7e-07 59.7 72 34.7
PGR119G1528 Punica granatum HOM05D000014 ORTHO05D000093 8.7e-07 59.7 72 34.7
Aa31sc75G30 Aethionema arabicum HOM05D008567 ORTHO05D000016 1.1e-06 59.3 86 32.6
Ca_03652_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 1.1e-06 59.3 103 33.0
VMungo1127G0663 Vigna mungo HOM05D000014 ORTHO05D000016 1.1e-06 59.3 66 39.4
Aa31sc864G10 Aethionema arabicum HOM05D008567 ORTHO05D000016 1.5e-06 58.9 103 30.1
Ah.08g223500 Amaranthus hybridus HOM05D000014 ORTHO05D000016 1.5e-06 58.9 108 28.7
BcaB02g11335 Brassica carinata HOM05D007738 ORTHO05D010100 1.5e-06 58.9 51 64.7
MD10G1200800 Malus domestica HOM05D000014 ORTHO05D000016 1.5e-06 58.9 72 37.5
MD15G1306600 Malus domestica HOM05D000014 ORTHO05D000016 1.5e-06 58.9 72 37.5
Manes.07G008991 Manihot esculenta HOM05D000014 ORTHO05D000016 1.5e-06 58.9 103 34.0
TWI23G1233 Tripterygium wilfordii HOM05D000014 ORTHO05D000016 1.5e-06 58.9 78 32.1
VMungo1127G0449 Vigna mungo HOM05D000014 ORTHO05D000016 1.5e-06 58.9 84 31.0
Ah.11g042020 Amaranthus hybridus HOM05D000014 ORTHO05D000016 1.9e-06 58.5 106 30.2
Ca_19616_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 1.9e-06 58.5 79 38.0
Manes.05G137052 Manihot esculenta HOM05D000014 ORTHO05D000016 1.9e-06 58.5 103 32.0
Manes.08G076205 Manihot esculenta HOM05D000014 ORTHO05D000016 1.9e-06 58.5 103 33.0
PSO591G0025 Papaver somniferum HOM05D000014 ORTHO05D000016 1.9e-06 58.5 72 34.7
PSO832G2397 Papaver somniferum HOM05D000014 ORTHO05D000016 1.9e-06 58.5 72 33.3
Aa31sc899G10 Aethionema arabicum HOM05D011547 ORTHO05D000016 2.5e-06 58.2 74 36.5
CANSAT54G1954 Cannabis sativa HOM05D000569 ORTHO05D000418 2.5e-06 58.2 80 32.5
EL10Ac7g17900 Beta vulgaris HOM05D000014 ORTHO05D000016 3.3e-06 57.8 109 27.5
CANSAT25G3297 Cannabis sativa HOM05D000014 ORTHO05D000016 3.3e-06 57.8 80 33.8
CANSAT80G1312 Cannabis sativa HOM05D000014 ORTHO05D000016 3.3e-06 57.8 80 33.8
Ca_27479_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 3.3e-06 57.8 113 31.9
Nitab4.5_0010432g0020 Nicotiana tabacum HOM05D008301 ORTHO05D000016 3.3e-06 57.8 79 31.6
PSO339G5834 Papaver somniferum HOM05D000014 ORTHO05D000016 3.3e-06 57.8 119 30.3
PGR119G1189 Punica granatum HOM05D000014 ORTHO05D000093 3.3e-06 57.8 72 33.3
TWI09G0144 Tripterygium wilfordii HOM05D000014 ORTHO05D000093 3.3e-06 57.8 64 43.8
Atru.chr12.2468 Acer truncatum HOM05D000014 ORTHO05D000016 4.3e-06 57.4 140 25.7
CANSAT78G1781 Cannabis sativa HOM05D000014 ORTHO05D000016 4.3e-06 57.4 103 29.1
CARHR218440 Cardamine hirsuta HOM05D000014 ORTHO05D000016 4.3e-06 57.4 114 31.6
FvH4_4g14403 Fragaria vesca HOM05D000014 ORTHO05D000016 4.3e-06 57.4 128 27.3
Manes.04G051445 Manihot esculenta HOM05D000014 ORTHO05D000016 4.3e-06 57.4 103 32.0
PSO063G2332 Papaver somniferum HOM05D000014 ORTHO05D000016 4.3e-06 57.4 72 31.9
PSO782G2329 Papaver somniferum HOM05D000014 ORTHO05D000016 4.3e-06 57.4 78 33.3
TPR.G23123 Trifolium pratense HOM05D000014 ORTHO05D000016 4.3e-06 57.4 79 31.6
TPR.G37356 Trifolium pratense HOM05D000014 ORTHO05D011222 4.3e-06 57.4 71 35.2
CANSAT01G1712 Cannabis sativa HOM05D000014 ORTHO05D000016 5.7e-06 57.0 78 35.9
Ca_09584_v3 Cicer arietinum L. HOM05D000014 ORTHO05D000016 5.7e-06 57.0 69 36.2
MD02G1206700 Malus domestica HOM05D000014 ORTHO05D000016 5.7e-06 57.0 84 33.3
Oeu007323.1 Olea europaea HOM05D000014 ORTHO05D000016 5.7e-06 57.0 83 30.1
TWI81G1095 Tripterygium wilfordii HOM05D000014 ORTHO05D000016 5.7e-06 57.0 103 29.1
VMungo1309G2812 Vigna mungo HOM05D009087 ORTHO05D000016 5.7e-06 57.0 72 36.1
Aa31LG7G11340 Aethionema arabicum HOM05D008567 ORTHO05D000016 7.4e-06 56.6 84 32.1
Aa31sc264G10 Aethionema arabicum HOM05D008567 ORTHO05D000016 7.4e-06 56.6 70 37.1
BcaC07g37390 Brassica carinata HOM05D000014 ORTHO05D000016 7.4e-06 56.6 78 38.5
FvH4_1g29493 Fragaria vesca HOM05D000014 ORTHO05D000016 7.4e-06 56.6 72 34.7
FvH4_3g31360 Fragaria vesca HOM05D002894 ORTHO05D002579 7.4e-06 56.6 75 36.0
Manes.04G064966 Manihot esculenta HOM05D000014 ORTHO05D000016 7.4e-06 56.6 103 31.1
Manes.17G023144 Manihot esculenta HOM05D000014 ORTHO05D000016 7.4e-06 56.6 98 29.6
Nitab4.5_0002283g0010 Nicotiana tabacum HOM05D008301 ORTHO05D000016 7.4e-06 56.6 100 29.0
PSO447G0280 Papaver somniferum HOM05D000014 ORTHO05D000016 7.4e-06 56.6 77 31.2
PSO541G4034 Papaver somniferum HOM05D000014 ORTHO05D000016 7.4e-06 56.6 107 28.0
CANSAT35G0521 Cannabis sativa HOM05D000014 ORTHO05D000016 9.7e-06 56.2 80 32.5
ClCG04G001660 Citrullus lanatus HOM05D000014 ORTHO05D000016 9.7e-06 56.2 85 30.6
HanXRQChr05g0135921 Helianthus annuus HOM05D000014 ORTHO05D000016 9.7e-06 56.2 103 26.2
Nitab4.5_0003683g0030 Nicotiana tabacum HOM05D008301 ORTHO05D000016 9.7e-06 56.2 138 25.4
Oeu021836.2 Olea europaea HOM05D000014 ORTHO05D000016 9.7e-06 56.2 84 32.1
TPR.G11378 Trifolium pratense HOM05D000014 ORTHO05D000016 9.7e-06 56.2 109 27.5
TPR.G15155 Trifolium pratense HOM05D000014 ORTHO05D011222 9.7e-06 56.2 74 31.1


User provided reference genes

Program Settings