Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 1.4e-107 392.9 190 100.0
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 1.4e-107 392.9 190 100.0
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 9.1e-107 390.2 190 99.5
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 3.8e-97 358.2 192 91.7
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 7.8e-90 334.0 201 85.6
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 4.4e-85 318.2 168 92.3
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 5.8e-85 317.8 199 82.9
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 1.2e-77 293.5 194 78.4
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 4.9e-76 288.1 201 75.1
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 3.5e-74 282.0 198 76.8
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 1.7e-73 279.6 196 77.6
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 5.1e-73 278.1 191 75.4
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 1.2e-71 273.5 196 76.5
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 4.7e-71 271.6 208 69.2
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 4.0e-70 268.5 202 69.3
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 1.4e-67 260.0 204 68.6
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 2.0e-61 239.6 174 75.9
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.1e-59 233.8 172 76.2
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.3e-57 226.9 207 62.3
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 5.1e-57 224.9 206 59.7
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 4.9e-44 181.8 211 49.3
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 4.2e-43 178.7 211 48.3
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 5.5e-43 178.3 212 49.5
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 2.1e-42 176.4 210 48.1
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 6.0e-42 174.9 210 48.1
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 7.9e-42 174.5 207 47.8
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 5.1e-41 171.8 207 46.4
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 8.7e-41 171.0 210 46.2
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 8.7e-41 171.0 208 44.7
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 1.9e-40 169.9 210 46.2
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 2.5e-40 169.5 212 47.2
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.3e-40 169.1 209 45.5
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 3.3e-40 169.1 207 47.3
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 4.3e-40 168.7 215 47.0
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 5.6e-40 168.3 202 45.0
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 5.6e-40 168.3 211 48.3
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 9.6e-40 167.5 206 45.6
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 9.6e-40 167.5 207 44.9
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 1.3e-39 167.2 210 46.7
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.3e-39 167.2 210 44.3
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 1.3e-39 167.2 212 45.3
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 1.6e-39 166.8 208 44.7
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 1.6e-39 166.8 208 47.1
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 1.6e-39 166.8 211 46.9
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 4.8e-39 165.2 209 45.5
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 4.8e-39 165.2 210 45.2
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 4.8e-39 165.2 207 46.9
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 6.2e-39 164.9 206 46.6
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 1.4e-38 163.7 208 46.2
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.4e-38 163.7 210 45.7
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 1.4e-38 163.7 207 46.4
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 2.4e-38 162.9 207 46.4
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.1e-38 162.5 210 45.2
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.0e-38 162.2 210 45.2
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 5.3e-38 161.8 210 43.3
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 6.9e-38 161.4 212 44.8
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 9.0e-38 161.0 190 46.8
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 9.0e-38 161.0 215 47.0
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.2e-37 160.6 213 47.4
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.5e-37 160.2 210 44.8
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.5e-37 160.2 213 47.4
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.5e-37 160.2 212 44.3
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.0e-37 159.8 206 45.1
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 2.0e-37 159.8 208 43.8
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.0e-37 159.8 213 47.4
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.6e-37 159.5 210 43.3
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 5.8e-37 158.3 208 45.2
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.0e-36 157.5 210 44.8
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 1.0e-36 157.5 208 42.8
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 1.3e-36 157.1 207 44.4
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 1.3e-36 157.1 234 41.9
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 1.3e-36 157.1 210 44.3
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.7e-36 156.8 213 43.7
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 3.8e-36 155.6 209 43.5
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 3.8e-36 155.6 211 42.7
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.9e-35 153.3 210 43.3
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 2.5e-35 152.9 184 47.3
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 4.2e-35 152.1 209 44.5
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 7.1e-35 151.4 199 47.2
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 7.1e-35 151.4 212 42.9
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 9.3e-35 151.0 216 45.4
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 2.1e-34 149.8 210 47.1
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.7e-34 149.4 214 42.5
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 4.6e-34 148.7 208 41.3
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 7.9e-34 147.9 208 42.8
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 1.0e-33 147.5 209 42.6
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 1.0e-33 147.5 211 46.0
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 1.8e-33 146.7 205 42.9
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 2.3e-33 146.4 186 46.8
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 3.0e-33 146.0 203 44.3
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 5.1e-33 145.2 186 48.4
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 1.5e-32 143.7 207 42.5
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.9e-32 143.3 196 42.9
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.9e-32 143.3 209 39.2
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.9e-32 143.3 200 43.0
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 3.3e-32 142.5 205 42.4
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 3.3e-32 142.5 184 44.6
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 2.1e-31 139.8 183 43.2
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 2.1e-31 139.8 207 41.5
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 2.8e-31 139.4 220 41.4
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 3.7e-31 139.0 207 40.1
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 8.2e-31 137.9 210 41.4
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 8.2e-31 137.9 212 40.6
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 1.8e-30 136.7 227 42.7
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.8e-30 136.7 213 40.4
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.4e-30 136.3 208 41.3
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 3.1e-30 136.0 220 40.5
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 3.1e-30 136.0 199 43.7
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 5.3e-30 135.2 182 43.4
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 6.9e-30 134.8 184 44.6
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 6.9e-30 134.8 205 38.0
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 1.2e-29 134.0 183 42.6
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 1.2e-29 134.0 210 41.4
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 1.5e-29 133.7 190 41.6
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 2.0e-29 133.3 214 42.5
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 2.6e-29 132.9 214 42.5
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 7.6e-29 131.3 210 37.1
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 1.0e-28 131.0 219 41.6
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 1.0e-28 131.0 219 39.3
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 1.3e-28 130.6 184 46.2
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.3e-28 130.6 183 43.2
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.2e-28 129.8 222 39.6
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 2.2e-28 129.8 201 41.3
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 2.9e-28 129.4 200 44.5
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 3.8e-28 129.0 192 46.4
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 8.4e-28 127.9 223 39.5
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 8.4e-28 127.9 187 46.0
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 8.4e-28 127.9 199 38.7
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.4e-27 127.1 224 37.9
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 2.5e-27 126.3 191 42.4
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 3.2e-27 125.9 232 38.4
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 3.2e-27 125.9 216 38.9
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 9.3e-27 124.4 185 42.7
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 2.1e-26 123.2 200 38.0
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 3.5e-26 122.5 186 38.7
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 3.5e-26 122.5 212 39.6
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.6e-26 122.1 185 40.0
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 4.6e-26 122.1 187 41.7
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.8e-25 120.2 181 42.5
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 3.9e-25 119.0 184 38.0
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 5.1e-25 118.6 175 43.4
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 1.1e-24 117.5 215 40.0
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 1.9e-24 116.7 208 37.0
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 1.9e-24 116.7 193 40.4
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 4.3e-24 115.5 187 39.0
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 5.7e-24 115.2 201 38.8
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 5.7e-24 115.2 180 41.7
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 1.6e-23 113.6 189 39.2
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 1.4e-22 110.5 185 38.9
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 1.8e-22 110.2 189 36.5
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 2.4e-22 109.8 200 41.0
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 5.3e-22 108.6 205 38.5
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 2.2e-20 103.2 236 34.7
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 2.2e-20 103.2 176 36.9
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 2.9e-20 102.8 207 35.7
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 4.2e-19 99.0 225 36.0
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 5.5e-19 98.6 149 37.6
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 5.5e-19 98.6 214 39.7
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 7.2e-19 98.2 231 35.1
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.3e-17 93.2 179 36.9
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 3.0e-17 92.8 220 31.8
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 2.5e-16 89.7 103 49.5
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 1.3e-15 87.4 153 39.2
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 1.7e-15 87.0 165 38.8
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 3.7e-15 85.9 186 35.5
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 6.3e-15 85.1 168 36.9
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 6.5e-12 75.1 174 32.2
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 8.5e-12 74.7 172 32.6
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 1.9e-11 73.6 172 32.0
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 5.5e-11 72.0 215 29.8
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 3.9e-09 65.9 203 34.5
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 8.8e-09 64.7 126 34.9
Gohir.A09G202700 Gossypium hirsutum HOM05D009286 ORTHO05D011130 3.3e-08 62.8 78 47.4
Gohir.D09G196800 Gossypium hirsutum HOM05D009286 ORTHO05D011130 3.3e-08 62.8 78 47.4
Gorai.006G220200 Gossypium raimondii HOM05D009286 ORTHO05D011130 3.3e-08 62.8 78 47.4
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 2.2e-07 60.1 72 45.8
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 6.3e-07 58.5 86 40.7
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 6.3e-07 58.5 77 41.6
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 8.2e-07 58.2 81 38.3
CiPaw.01G125200 Carya illinoinensis HOM05D009286 ORTHO05D011130 1.8e-06 57.0 146 32.9
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 7.0e-06 55.1 131 31.3
COL.COLO4_20307 Corchorus olitorius HOM05D009286 ORTHO05D011130 7.0e-06 55.1 77 42.9
Haze_11576 Corylus avellana HOM05D009286 ORTHO05D011130 7.0e-06 55.1 79 43.0


User provided reference genes

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