Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 1.0e-82 310.1 163 100.0
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 4.6e-75 284.6 156 96.2
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 2.7e-59 232.3 147 88.4
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.0e-45 184.9 151 68.9
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.8e-42 174.5 132 74.2
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.9e-37 159.1 118 72.9
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.2e-33 147.1 134 63.4
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.8e-32 142.5 130 62.3
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 1.2e-30 137.1 127 57.5
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.0e-29 134.0 127 59.1
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-29 133.7 132 59.8
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-29 133.7 132 59.1
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.0e-29 131.7 130 56.9
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 6.6e-29 131.3 132 58.3
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-28 130.6 156 50.0
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-28 130.6 156 50.0
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-28 130.2 132 59.8
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-28 129.8 122 59.8
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 3.3e-28 129.0 122 59.0
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 3.3e-28 129.0 122 59.0
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.2e-28 128.6 137 56.9
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.2e-28 128.6 130 57.7
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 5.5e-28 128.3 122 59.0
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 5.5e-28 128.3 122 59.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 9.5e-28 127.5 134 58.2
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-27 126.7 109 62.4
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.6e-27 126.7 147 56.5
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 8.0e-27 124.4 152 53.3
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.0e-26 124.0 152 52.6
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.4e-26 123.6 150 54.0
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 3.0e-26 122.5 148 49.3
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 4.0e-26 122.1 135 57.8
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 4.0e-26 122.1 137 53.3
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 6.8e-26 121.3 131 54.2
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 6.8e-26 121.3 134 57.5
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.5e-25 120.2 135 56.3
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.0e-25 119.8 152 51.3
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.6e-25 119.4 130 57.7
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.6e-25 119.4 137 53.3
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.4e-25 118.6 136 53.7
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.7e-24 116.7 152 50.7
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 3.2e-23 112.5 147 47.6
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.4e-23 111.7 127 52.0
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 4.5e-22 108.6 149 50.3
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.9e-20 103.2 135 51.9
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.2e-19 100.5 142 45.8
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.0e-18 97.4 142 46.5
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 1.4e-18 97.1 143 49.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.3e-18 96.3 142 46.5
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.3e-18 96.3 142 46.5
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.2e-18 95.1 86 59.3
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.2e-18 95.1 142 45.8
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 8.9e-18 94.4 104 55.8
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.2e-17 94.0 104 55.8
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.2e-17 94.0 93 54.8
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.0e-17 93.2 142 45.8
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.6e-17 92.8 116 51.7
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 2.6e-17 92.8 142 47.2
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.4e-17 92.0 142 45.1
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 9.8e-17 90.9 130 50.0
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 9.8e-17 90.9 142 45.1
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.3e-16 90.5 131 48.9
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 1.7e-16 90.1 126 48.4
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.2e-16 89.7 142 45.1
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 2.2e-16 89.7 111 50.5
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 2.9e-16 89.4 125 48.0
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.9e-16 89.4 143 46.9
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.9e-16 89.4 143 46.9
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.9e-16 89.4 136 44.1
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.7e-16 89.0 131 46.6
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 4.9e-16 88.6 131 48.9
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 6.4e-16 88.2 129 48.8
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 6.4e-16 88.2 144 47.2
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 6.4e-16 88.2 109 52.3
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.4e-15 87.0 139 45.3
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.4e-15 87.0 129 48.1
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.4e-15 86.3 142 44.4
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 2.4e-15 86.3 115 49.6
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 3.2e-15 85.9 103 52.4
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.2e-15 85.9 129 48.1
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 4.1e-15 85.5 111 46.8
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 4.1e-15 85.5 157 43.3
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 7.0e-15 84.7 123 43.9
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 7.0e-15 84.7 109 52.3
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.2e-14 84.0 137 44.5
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-14 84.0 144 44.4
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.6e-14 83.6 115 46.1
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.6e-14 83.6 146 43.2
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.6e-14 83.6 111 51.4
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 2.0e-14 83.2 111 50.5
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 2.0e-14 83.2 137 44.5
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 2.7e-14 82.8 130 44.6
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 2.7e-14 82.8 109 48.6
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 2.7e-14 82.8 131 41.2
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 2.7e-14 82.8 132 45.5
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 3.5e-14 82.4 113 46.0
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 3.5e-14 82.4 118 46.6
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 6.0e-14 81.6 135 44.4
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 7.8e-14 81.3 114 48.2
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.0e-13 80.9 111 50.5
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.0e-13 80.9 145 42.8
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 3.0e-13 79.3 141 41.1
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 3.0e-13 79.3 114 43.9
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 3.9e-13 79.0 104 51.9
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 3.9e-13 79.0 132 43.2
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 3.9e-13 79.0 117 43.6
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 5.0e-13 78.6 121 40.5
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 6.6e-13 78.2 89 52.8
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 8.6e-13 77.8 94 45.7
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 8.6e-13 77.8 104 51.0
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 8.6e-13 77.8 89 52.8
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 8.6e-13 77.8 142 40.1
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.5e-12 77.0 129 42.6
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 3.3e-12 75.9 92 48.9
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 3.3e-12 75.9 92 48.9
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 3.3e-12 75.9 104 50.0
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 3.3e-12 75.9 69 59.4
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 5.6e-12 75.1 134 42.5
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 9.5e-12 74.3 115 44.3
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 9.5e-12 74.3 104 45.2
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.2e-11 73.9 119 44.5
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 1.6e-11 73.6 117 41.9
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 2.1e-11 73.2 104 46.2
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 2.8e-11 72.8 145 34.5
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 3.6e-11 72.4 103 45.6
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 6.2e-11 71.6 108 42.6
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-10 70.9 143 39.2
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.8e-10 70.1 105 44.8
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 5.2e-10 68.6 145 38.6
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-09 67.4 83 49.4
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.0e-09 66.6 73 50.7
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.7e-08 63.5 107 43.0
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 6.4e-08 61.6 109 41.3
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 4.1e-07 58.9 137 36.5
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 9.2e-07 57.8 94 45.7
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 9.2e-07 57.8 73 42.5
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 2.1e-06 56.6 111 37.8
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 4.6e-06 55.5 95 38.9
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 7.8e-06 54.7 78 47.4


User provided reference genes

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