Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 5.4e-174 614.4 346 100.0
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 5.4e-174 614.4 346 100.0
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 6.7e-156 554.3 352 90.3
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 6.7e-156 554.3 352 90.3
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 2.5e-142 509.2 346 87.9
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 8.8e-132 474.2 345 73.3
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 8.2e-130 467.6 345 72.2
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 3.4e-128 462.2 346 71.1
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 1.0e-127 460.7 345 71.3
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 3.2e-126 455.7 345 71.3
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 7.2e-126 454.5 345 70.4
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 2.7e-125 452.6 346 68.5
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 1.4e-124 450.3 345 67.8
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 5.1e-124 448.4 346 67.6
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.2e-120 437.2 346 66.8
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 7.2e-118 427.9 346 69.1
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.6e-117 426.8 346 66.2
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 2.7e-117 426.0 345 68.7
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 1.4e-116 423.7 346 76.3
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.6e-112 410.2 346 63.0
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.2e-107 394.0 349 60.7
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 9.7e-107 391.0 334 63.8
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 4.4e-99 365.5 349 63.6
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.7e-98 363.6 349 62.5
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.6e-96 357.1 349 63.3
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 5.9e-96 355.1 350 62.6
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 1.3e-95 354.0 350 63.7
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 2.3e-95 353.2 350 63.7
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.9e-95 352.8 350 63.4
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 3.8e-95 352.4 349 63.3
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.1e-94 350.9 349 63.0
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-94 350.5 349 62.5
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 2.5e-94 349.7 349 55.0
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.2e-93 347.4 349 54.7
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 8.0e-93 344.7 350 63.1
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 6.8e-92 341.7 351 62.1
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.9e-92 341.3 352 62.2
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.2e-91 340.9 357 54.3
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 1.2e-91 340.9 344 54.7
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.6e-91 339.7 349 59.6
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.3e-90 337.4 357 61.1
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.2e-90 336.7 349 61.3
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.8e-90 336.3 349 61.6
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.1e-89 334.3 349 60.2
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.1e-89 334.3 349 54.4
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.1e-89 332.8 365 59.2
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 4.1e-89 332.4 351 62.7
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 4.1e-89 332.4 350 61.7
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 4.1e-89 332.4 349 56.4
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 4.1e-89 332.4 350 55.1
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 1.6e-88 330.5 350 60.6
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.0e-88 330.1 349 58.7
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 4.5e-88 328.9 351 60.1
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.0e-87 327.8 349 53.6
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.3e-87 327.4 351 60.4
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.7e-87 327.0 350 61.1
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 2.3e-87 326.6 355 54.6
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 5.0e-87 325.5 350 60.3
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 8.6e-87 324.7 350 59.1
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 8.6e-87 324.7 349 53.0
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.5e-86 323.9 349 60.2
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 2.5e-86 323.2 349 59.6
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.2e-85 320.9 351 60.4
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 1.6e-85 320.5 352 59.7
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.8e-85 319.7 375 50.4
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 3.6e-85 319.3 350 52.0
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 4.7e-85 318.9 349 59.9
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.0e-85 318.2 352 57.1
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 3.0e-84 316.2 346 59.8
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 4.0e-84 315.8 349 55.0
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 5.2e-84 315.5 350 59.1
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 2.6e-83 313.2 356 58.1
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 3.4e-83 312.8 352 58.5
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 2.2e-82 310.1 348 61.2
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 3.7e-82 309.3 350 56.6
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 3.7e-82 309.3 349 57.9
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 8.3e-82 308.1 350 57.7
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 2.7e-80 303.1 359 56.3
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 6.0e-80 302.0 350 50.9
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.3e-79 300.8 326 60.1
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 1.3e-79 300.8 352 52.6
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 3.9e-79 299.3 358 56.1
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 5.0e-79 298.9 352 55.1
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 9.5e-78 294.7 350 56.6
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 2.1e-77 293.5 345 49.3
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.0e-76 289.3 351 56.7
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 3.7e-74 282.7 383 52.2
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.9e-73 280.4 237 64.1
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 3.2e-73 279.6 360 54.4
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 2.7e-72 276.6 297 58.9
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.7e-72 276.6 333 59.2
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 4.6e-72 275.8 378 43.9
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 2.3e-71 273.5 230 64.8
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 2.3e-71 273.5 230 64.8
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.9e-70 270.4 351 45.9
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.3e-70 269.6 362 52.2
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 7.3e-70 268.5 297 58.6
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 2.1e-69 266.9 350 54.0
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.8e-69 266.5 363 51.8
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 8.1e-69 265.0 331 56.5
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.1e-68 264.6 327 56.6
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 2.0e-67 260.4 325 56.6
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 7.5e-67 258.5 349 54.2
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 4.9e-66 255.8 349 52.4
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 6.4e-66 255.4 249 64.3
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 6.4e-66 255.4 307 57.7
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 5.4e-65 252.3 250 64.8
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 4.6e-64 249.2 302 49.3
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.1e-62 244.6 234 56.8
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 6.2e-61 238.8 328 54.3
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 6.2e-61 238.8 246 62.6
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.5e-59 234.2 307 47.9
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.4e-59 232.6 301 56.8
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 5.8e-59 232.3 234 66.7
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.7e-58 230.7 301 56.5
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 1.4e-57 227.6 316 45.6
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.2e-56 224.6 234 55.1
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 3.9e-55 219.5 318 47.5
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 9.6e-54 214.9 234 63.2
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 4.7e-53 212.6 234 62.8
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 3.1e-52 209.9 171 65.5
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 5.8e-51 205.7 234 52.6
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.1e-49 201.4 220 61.8
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 9.3e-49 198.4 234 53.4
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.0e-47 194.9 234 59.8
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 4.8e-45 186.0 236 58.9
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 8.1e-45 185.3 236 58.9
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.8e-44 184.1 230 58.7
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 2.6e-43 180.3 233 58.4
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.9e-41 174.1 233 57.1
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 8.1e-37 158.7 275 46.9
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.2e-35 154.8 156 53.8
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.2e-34 150.6 73 90.4
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 8.4e-34 148.7 342 35.4
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 2.7e-32 143.7 357 38.9
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 7.9e-32 142.1 246 51.6
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 8.7e-31 138.7 279 42.7
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 5.6e-30 136.0 76 73.7
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 9.6e-30 135.2 330 33.9
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.8e-29 133.7 174 57.5
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 4.8e-29 132.9 76 78.9
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 2.0e-27 127.5 234 38.5
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 2.6e-27 127.1 359 29.2
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 7.6e-27 125.6 130 70.8
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-25 121.7 204 37.7
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.5e-24 116.7 150 60.0
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.9e-22 110.9 163 44.8
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 2.2e-21 107.5 59 72.9
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 2.5e-17 94.0 50 74.0
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.2e-16 91.7 103 51.5
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 7.4e-14 82.4 126 42.9
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 1.3e-13 81.6 82 48.8
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 1.4e-09 68.2 172 25.0
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 4.2e-09 66.6 45 71.1
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 4.2e-09 66.6 45 71.1
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 5.5e-09 66.2 87 51.7
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 1.0e-07 62.0 103 36.9


User provided reference genes

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