Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 4.9e-260 900.6 444 100.0
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 5.0e-188 661.4 484 74.8
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 2.4e-142 509.6 577 54.4
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 1.0e-140 504.2 264 95.5
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 2.0e-136 490.0 563 53.1
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 2.0e-136 490.0 563 53.1
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 2.6e-136 489.6 563 52.9
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 3.7e-135 485.7 563 53.1
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 4.9e-135 485.3 580 51.6
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 5.0e-132 475.3 573 51.7
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 3.7e-127 459.1 548 50.0
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 3.4e-112 409.5 508 49.8
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 3.8e-111 406.0 532 48.7
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 1.9e-110 403.7 541 47.9
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 7.1e-110 401.7 535 47.3
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 1.1e-107 394.4 535 47.9
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 3.1e-105 386.3 533 46.3
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 9.0e-105 384.8 261 77.4
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 1.8e-65 254.2 539 35.8
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 7.4e-51 205.7 404 38.4
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 3.8e-47 193.4 235 43.0
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 2.5e-46 190.7 518 30.7
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 3.2e-46 190.3 111 86.5
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 1.8e-44 184.5 235 43.0
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 2.3e-44 184.1 240 43.3
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 8.8e-44 182.2 236 42.8
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 2.0e-43 181.0 237 41.4
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 5.7e-43 179.5 240 43.3
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 7.5e-43 179.1 239 44.4
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 9.8e-43 178.7 239 42.7
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.3e-42 178.3 239 42.7
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 1.4e-41 174.9 234 41.9
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 1.4e-41 174.9 246 42.7
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 1.4e-41 174.9 239 42.7
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 9.1e-41 172.2 234 44.0
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 9.1e-41 172.2 234 44.0
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 9.1e-41 172.2 239 42.3
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 9.1e-41 172.2 235 41.7
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 1.6e-40 171.4 234 44.0
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 2.0e-40 171.0 231 42.0
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 2.7e-40 170.6 411 33.3
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 3.5e-40 170.2 239 43.9
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 5.9e-40 169.5 238 41.2
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 5.9e-40 169.5 235 41.3
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 1.3e-39 168.3 510 29.4
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 2.9e-39 167.2 216 43.5
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 3.8e-39 166.8 238 40.3
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 8.5e-39 165.6 236 41.9
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 1.5e-38 164.9 225 40.4
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 2.5e-38 164.1 231 42.0
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 3.2e-38 163.7 240 40.4
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 4.2e-38 163.3 234 43.6
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 4.2e-38 163.3 233 41.2
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 5.5e-38 162.9 235 39.6
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 5.5e-38 162.9 240 41.7
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 7.2e-38 162.5 240 41.7
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 1.2e-37 161.8 299 36.1
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.6e-37 160.2 233 42.9
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 3.6e-37 160.2 223 42.6
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 4.7e-37 159.8 475 30.3
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 6.1e-37 159.5 237 38.8
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 1.0e-36 158.7 240 40.8
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 1.0e-36 158.7 475 30.5
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 1.0e-36 158.7 237 39.2
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 2.3e-36 157.5 236 40.7
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 4.0e-36 156.8 512 27.7
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 4.0e-36 156.8 240 40.8
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 6.8e-36 156.0 234 41.0
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 2.6e-35 154.1 319 34.2
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 2.6e-35 154.1 231 40.3
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 4.4e-35 153.3 548 28.3
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 4.4e-35 153.3 541 28.7
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 7.5e-35 152.5 237 38.4
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 9.8e-35 152.1 234 38.0
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 9.8e-35 152.1 234 40.6
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 9.8e-35 152.1 474 27.8
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 6.3e-34 149.4 426 30.5
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 8.3e-34 149.1 182 45.6
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 1.4e-33 148.3 539 27.8
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 3.1e-33 147.1 238 37.0
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 4.1e-33 146.7 231 36.4
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 9.1e-33 145.6 249 39.0
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 1.2e-32 145.2 239 38.1
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 2.7e-32 144.1 216 38.9
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 4.5e-32 143.3 185 43.8
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 5.9e-32 142.9 449 28.1
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 7.7e-32 142.5 235 36.2
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 1.3e-31 141.7 234 38.5
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 2.3e-31 141.0 359 30.9
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 3.8e-31 140.2 223 42.2
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 6.6e-31 139.4 220 40.5
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 2.5e-30 137.5 243 38.3
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 2.5e-30 137.5 239 38.1
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 3.3e-30 137.1 356 30.9
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 9.5e-30 135.6 265 35.8
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 1.2e-29 135.2 239 36.4
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 3.6e-29 133.7 181 40.3
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.3e-28 131.0 181 39.8
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 5.2e-28 129.8 421 29.9
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 6.8e-28 129.4 421 29.9
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 2.6e-27 127.5 220 38.2
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 3.4e-27 127.1 224 37.1
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 5.7e-27 126.3 213 37.6
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 2.2e-26 124.4 233 33.9
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 2.9e-26 124.0 239 36.0
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 3.7e-26 123.6 392 25.8
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 4.9e-26 123.2 154 42.2
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 1.1e-25 122.1 170 41.2
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 4.1e-25 120.2 234 34.2
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 3.5e-24 117.1 238 32.8
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 4.6e-24 116.7 211 33.2
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 4.6e-24 116.7 161 41.6
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 1.3e-23 115.2 237 30.8
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 1.7e-23 114.8 203 34.5
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 6.6e-23 112.8 239 30.1
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 1.5e-22 111.7 234 33.3
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 2.8e-21 107.5 230 35.7
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 1.3e-18 98.6 154 40.9
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 8.3e-18 95.9 238 27.3
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 1.1e-17 95.5 184 32.6
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 5.4e-17 93.2 236 28.8
C06p08980 Brassica napus HOM05D004843 ORTHO05D005833 1.6e-16 91.7 44 97.7
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 1.0e-15 89.0 228 31.6
BcaB07g33349 Brassica carinata HOM05D004843 ORTHO05D005833 1.3e-15 88.6 100 55.0
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 4.3e-14 83.6 126 41.3
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-12 77.8 108 39.8
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 6.8e-12 76.3 260 23.5
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 4.4e-11 73.6 226 28.8
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 3.0e-07 60.8 70 44.3


User provided reference genes

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