Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 1.6e-35 152.1 73 100.0
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 1.6e-35 152.1 73 100.0
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 1.6e-35 152.1 73 100.0
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 1.5e-33 145.6 73 95.9
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 1.5e-33 145.6 73 95.9
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 9.1e-31 136.3 73 87.7
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 1.6e-30 135.6 73 86.3
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.5e-30 134.4 73 87.7
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 8.5e-29 129.8 73 83.6
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 3.2e-28 127.9 74 83.8
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.7e-24 115.5 60 86.7
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 3.7e-24 114.4 73 80.8
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 4.9e-24 114.0 60 85.0
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 8.3e-24 113.2 77 71.4
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 5.4e-23 110.5 74 71.6
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 7.0e-23 110.2 62 82.3
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 9.1e-23 109.8 61 78.7
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.2e-22 109.4 62 80.6
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 1.6e-22 109.0 76 71.1
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 2.7e-22 108.2 77 70.1
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 2.7e-22 108.2 77 68.8
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 5.9e-22 107.1 71 71.8
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 7.7e-22 106.7 56 83.9
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 7.7e-22 106.7 81 65.4
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.0e-21 106.3 81 67.9
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 1.7e-21 105.5 73 67.1
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 2.9e-21 104.8 55 89.1
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 2.9e-21 104.8 73 68.5
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 3.8e-21 104.4 81 65.4
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 5.0e-21 104.0 81 65.4
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 6.6e-21 103.6 71 69.0
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 6.6e-21 103.6 71 69.0
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 6.6e-21 103.6 57 78.9
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 6.6e-21 103.6 81 64.2
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-20 102.8 77 68.8
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.5e-20 102.4 59 81.4
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 1.5e-20 102.4 64 73.4
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 1.9e-20 102.1 81 64.2
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 2.5e-20 101.7 81 66.7
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.5e-20 101.7 59 76.3
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.5e-20 101.7 80 66.2
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 3.3e-20 101.3 80 62.5
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.3e-20 101.3 70 71.4
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.2e-20 100.9 76 64.5
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 4.2e-20 100.9 64 75.0
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 5.5e-20 100.5 81 60.5
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 5.5e-20 100.5 81 58.0
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 5.5e-20 100.5 77 66.2
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 7.2e-20 100.1 67 70.1
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 7.2e-20 100.1 64 68.8
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 9.5e-20 99.8 78 62.8
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 9.5e-20 99.8 81 64.2
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.2e-19 99.4 81 60.5
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 1.2e-19 99.4 66 71.2
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.2e-19 99.4 59 71.2
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.2e-19 99.4 59 71.2
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 1.2e-19 99.4 81 61.7
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.2e-19 99.4 81 61.7
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.2e-19 99.4 73 64.4
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.2e-19 99.4 69 66.7
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 1.2e-19 99.4 79 59.5
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.6e-19 99.0 80 63.8
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 1.6e-19 99.0 80 63.8
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 2.1e-19 98.6 81 61.7
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 2.1e-19 98.6 64 67.2
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 2.1e-19 98.6 54 77.8
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 2.8e-19 98.2 81 56.8
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 2.8e-19 98.2 80 60.0
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 3.6e-19 97.8 50 84.0
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 3.6e-19 97.8 54 77.8
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 3.6e-19 97.8 80 60.0
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 4.7e-19 97.4 81 58.0
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 4.7e-19 97.4 81 58.0
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 4.7e-19 97.4 70 67.1
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 4.7e-19 97.4 50 80.0
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 4.7e-19 97.4 81 58.0
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 6.1e-19 97.1 81 59.3
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 6.1e-19 97.1 63 68.3
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 6.1e-19 97.1 63 68.3
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 6.1e-19 97.1 50 82.0
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 6.1e-19 97.1 50 82.0
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 6.1e-19 97.1 50 82.0
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 6.1e-19 97.1 60 71.7
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 8.0e-19 96.7 76 61.8
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 8.0e-19 96.7 50 82.0
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 8.0e-19 96.7 81 54.3
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 8.0e-19 96.7 81 59.3
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 8.0e-19 96.7 53 75.5
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 1.0e-18 96.3 53 75.5
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 1.4e-18 95.9 81 59.3
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.4e-18 95.9 57 71.9
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.4e-18 95.9 76 61.8
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.8e-18 95.5 59 69.5
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 1.8e-18 95.5 81 58.0
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 1.8e-18 95.5 81 58.0
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 1.8e-18 95.5 82 57.3
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 1.8e-18 95.5 83 57.8
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 1.8e-18 95.5 69 65.2
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 1.8e-18 95.5 68 67.6
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.3e-18 95.1 54 74.1
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 2.3e-18 95.1 77 55.8
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.3e-18 95.1 63 69.8
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 2.3e-18 95.1 76 60.5
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 3.0e-18 94.7 54 74.1
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 3.0e-18 94.7 48 85.4
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 3.0e-18 94.7 67 58.2
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 3.0e-18 94.7 48 85.4
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 4.0e-18 94.4 61 62.3
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.0e-18 94.4 59 69.5
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 4.0e-18 94.4 52 75.0
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 4.0e-18 94.4 81 56.8
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 5.2e-18 94.0 70 57.1
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 5.2e-18 94.0 80 60.0
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 5.2e-18 94.0 80 56.2
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 5.2e-18 94.0 68 66.2
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 5.2e-18 94.0 68 66.2
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 5.2e-18 94.0 50 76.0
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 5.2e-18 94.0 51 78.4
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 5.2e-18 94.0 51 78.4
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 6.8e-18 93.6 45 84.4
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 6.8e-18 93.6 72 62.5
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 6.8e-18 93.6 79 58.2
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 6.8e-18 93.6 81 55.6
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 8.9e-18 93.2 47 80.9
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 8.9e-18 93.2 71 64.8
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 2.0e-17 92.0 77 54.5
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 2.6e-17 91.7 50 76.0
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.6e-17 91.7 58 70.7
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 4.4e-17 90.9 74 58.1
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 4.4e-17 90.9 64 65.6
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 4.4e-17 90.9 54 75.9
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 5.7e-17 90.5 81 56.8
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 7.5e-17 90.1 53 73.6
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 7.5e-17 90.1 65 63.1
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 7.5e-17 90.1 65 63.1
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 9.8e-17 89.7 50 76.0
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 9.8e-17 89.7 54 75.9
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 9.8e-17 89.7 51 72.5
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.7e-16 89.0 61 63.9
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.7e-16 89.0 60 70.0
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 2.2e-16 88.6 43 88.4
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 6.3e-16 87.0 50 70.0
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.1e-15 86.3 52 67.3
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 1.1e-15 86.3 46 78.3
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 2.4e-15 85.1 66 63.6
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 3.2e-15 84.7 59 62.7
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.4e-15 84.0 73 58.9
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.4e-15 84.0 73 58.9
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 2.0e-14 82.0 53 69.8
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 2.3e-13 78.6 42 76.2
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 4.3e-12 74.3 46 67.4
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.0e-10 69.7 50 70.0
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 1.2e-09 66.2 51 62.7


User provided reference genes

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