Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 5.7e-194 681.0 422 96.0
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 5.7e-194 681.0 422 100.0
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 3.4e-186 655.2 412 99.5
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 7.6e-170 600.9 422 80.1
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 4.1e-168 595.1 422 84.8
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 2.1e-159 566.2 427 79.9
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.9e-125 453.4 488 62.7
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 3.4e-122 442.6 480 64.8
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 5.5e-120 435.3 495 62.2
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 2.0e-117 426.8 476 61.3
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 7.4e-117 424.9 463 65.2
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 2.9e-105 386.3 454 61.9
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 3.2e-104 382.9 453 58.7
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 4.2e-104 382.5 454 62.8
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 4.2e-104 382.5 450 58.7
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 5.5e-104 382.1 451 59.0
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 3.0e-102 376.3 452 64.4
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 6.7e-102 375.2 467 58.5
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 9.7e-101 371.3 460 59.3
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.4e-67 261.2 425 43.8
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 1.2e-55 221.5 509 39.1
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 4.0e-54 216.5 505 38.8
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 4.4e-53 213.0 504 38.9
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 5.8e-53 212.6 492 39.4
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.4e-51 208.0 477 36.3
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 1.4e-51 208.0 494 34.4
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.4e-51 208.0 492 35.6
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 1.9e-51 207.6 494 34.4
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 1.3e-49 201.4 481 33.5
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 2.3e-49 200.7 498 38.4
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 3.9e-49 199.9 493 35.5
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.5e-48 197.2 492 39.2
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 4.3e-48 196.4 495 34.5
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 6.2e-47 192.6 495 37.2
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.1e-46 191.8 456 34.6
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.1e-46 191.8 488 34.2
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.4e-46 191.4 493 35.7
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.4e-46 190.7 488 37.5
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.4e-46 190.7 485 34.0
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.9e-46 189.1 492 36.8
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 9.0e-46 188.7 487 32.4
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 1.5e-45 188.0 495 32.7
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 4.4e-45 186.4 490 34.3
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 9.9e-45 185.3 489 36.2
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 1.7e-44 184.5 521 36.7
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 2.9e-44 183.7 460 32.8
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 2.9e-44 183.7 506 32.2
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 4.9e-44 183.0 399 37.1
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 4.9e-44 183.0 473 32.8
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 6.4e-44 182.6 331 38.7
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 1.1e-43 181.8 489 36.8
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.4e-43 181.4 394 34.5
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 3.2e-43 180.3 439 36.0
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 3.2e-43 180.3 472 32.8
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 7.1e-43 179.1 464 37.3
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 9.3e-43 178.7 405 38.0
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 9.3e-43 178.7 493 34.3
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 9.3e-43 178.7 505 31.3
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.2e-42 178.3 470 33.6
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.6e-42 177.9 497 35.2
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 2.1e-42 177.6 483 37.5
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.5e-42 176.8 482 35.3
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 3.5e-42 176.8 483 36.9
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 4.6e-42 176.4 488 36.1
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 1.3e-41 174.9 470 32.1
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.3e-41 174.1 495 33.5
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 3.0e-41 173.7 405 36.5
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 5.1e-41 172.9 511 31.1
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 5.1e-41 172.9 450 38.0
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 8.7e-41 172.2 363 35.8
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.1e-40 171.8 427 39.8
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.3e-40 170.2 424 32.8
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 7.3e-40 169.1 522 33.3
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 1.3e-39 168.3 477 31.0
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 3.6e-39 166.8 470 38.5
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 4.8e-39 166.4 471 32.3
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 6.2e-39 166.0 538 29.6
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 6.2e-39 166.0 385 40.8
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 8.1e-39 165.6 355 36.6
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 6.9e-38 162.5 426 35.9
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 6.9e-38 162.5 478 31.6
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.2e-37 161.8 357 42.0
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 4.5e-37 159.8 479 36.1
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 7.6e-37 159.1 414 34.8
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 7.6e-37 159.1 414 34.8
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.3e-36 158.3 361 36.3
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.7e-36 157.9 517 33.8
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 3.8e-36 156.8 350 40.3
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 4.9e-36 156.4 438 32.9
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.9e-36 156.4 468 35.9
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.1e-35 155.2 368 35.3
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 1.9e-35 154.5 489 35.4
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.9e-35 154.5 462 35.3
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 5.4e-35 152.9 260 39.6
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 7.1e-35 152.5 359 35.9
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 9.3e-35 152.1 482 28.4
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 6.0e-34 149.4 346 40.2
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 1.0e-33 148.7 387 33.6
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 2.3e-33 147.5 350 40.6
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 3.9e-33 146.7 479 29.4
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 3.9e-33 146.7 260 40.0
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.1e-33 146.4 418 33.3
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 2.5e-32 144.1 446 35.4
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 1.3e-31 141.7 438 36.5
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.1e-31 141.0 382 30.9
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 3.7e-31 140.2 377 31.0
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.8e-30 137.9 423 28.8
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 4.0e-30 136.7 362 38.7
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 9.0e-30 135.6 384 35.9
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 1.2e-29 135.2 414 31.9
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 1.5e-29 134.8 433 38.1
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 4.5e-29 133.3 412 33.7
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 9.9e-29 132.1 406 30.3
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 6.4e-28 129.4 275 34.2
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 2.5e-27 127.5 424 28.8
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 7.1e-27 125.9 251 35.1
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.8e-25 121.3 185 44.3
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 3.3e-24 117.1 448 27.0
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.8e-22 111.3 314 38.2
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.4e-22 110.9 261 35.2
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 7.6e-21 105.9 333 28.5
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 6.5e-20 102.8 301 38.5
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.9e-19 101.3 247 38.1
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 2.5e-19 100.9 154 43.5
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 7.1e-19 99.4 162 39.5
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 2.7e-18 97.4 397 28.0
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.8e-17 94.7 190 37.4
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 1.8e-17 94.7 335 27.8
AL7G40510 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 3.7e-15 87.0 50 84.0
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 5.9e-13 79.7 62 61.3
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 7.7e-13 79.3 61 60.7
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.9e-12 77.4 61 59.0
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.2e-11 73.6 138 39.1
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 9.4e-11 72.4 161 46.0
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 1.2e-10 72.0 247 27.9
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.0e-09 67.4 186 36.0
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 2.5e-08 64.3 183 28.4
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 5.7e-08 63.2 102 43.1
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 2.8e-07 60.8 57 49.1
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 4.1e-06 57.0 105 37.1


User provided reference genes

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