Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-46 188.3 103 100.0
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.9e-46 188.3 103 100.0
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.9e-46 188.3 103 100.0
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 3.9e-43 177.9 103 93.2
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 6.4e-38 160.6 108 84.3
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.4e-37 159.5 108 84.3
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.1e-36 155.6 108 81.5
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 2.7e-36 155.2 109 80.7
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 4.6e-36 154.5 108 82.4
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.3e-30 136.3 114 72.8
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.7e-30 136.0 105 74.3
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 1.7e-30 136.0 106 72.6
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.7e-30 136.0 108 75.0
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 1.7e-30 136.0 106 72.6
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 1.7e-30 136.0 106 72.6
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.2e-30 135.6 108 73.1
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-30 135.2 106 72.6
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 2.9e-30 135.2 108 72.2
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.7e-30 134.8 105 73.3
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 3.7e-30 134.8 106 72.6
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 3.7e-30 134.8 105 74.3
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 4.9e-30 134.4 108 74.1
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.3e-27 126.3 108 69.4
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 1.3e-27 126.3 108 70.4
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-27 126.3 106 67.9
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 1.3e-27 126.3 108 70.4
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 3.8e-22 108.2 103 64.1
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 4.9e-22 107.8 116 59.5
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 4.2e-21 104.8 110 58.2
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 2.7e-20 102.1 108 58.3
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 4.6e-20 101.3 111 60.4
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 4.6e-20 101.3 112 59.8
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.3e-19 99.8 109 56.0
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.3e-19 99.8 111 58.6
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 6.6e-19 97.4 108 58.3
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 8.7e-19 97.1 102 61.8
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-18 96.7 108 58.3
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.1e-18 96.7 102 61.8
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.9e-18 95.9 113 55.8
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 4.3e-18 94.7 112 58.9
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.3e-18 94.7 110 56.4
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.3e-18 94.7 110 56.4
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 5.6e-18 94.4 111 52.3
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.3e-17 93.2 110 55.5
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.3e-17 93.2 116 55.2
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.3e-17 93.2 108 57.4
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 2.8e-17 92.0 108 54.6
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 4.8e-17 91.3 104 57.7
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 4.8e-17 91.3 113 54.9
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 8.1e-17 90.5 109 55.0
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.8e-16 89.4 105 55.2
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 4.0e-16 88.2 107 57.9
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 4.0e-16 88.2 115 50.4
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 4.0e-16 88.2 108 55.6
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 6.9e-16 87.4 112 50.9
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 6.9e-16 87.4 108 53.7
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 9.0e-16 87.0 115 55.7
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.5e-15 86.3 108 54.6
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 1.5e-15 86.3 111 56.8
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 1.5e-15 86.3 106 54.7
BcaB07g33586 Brassica carinata HOM05D004268 ORTHO05D004958 2.0e-15 85.9 104 55.8
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.0e-15 85.9 115 50.4
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 2.0e-15 85.9 108 50.9
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 2.6e-15 85.5 105 53.3
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.6e-15 85.5 112 51.8
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.6e-15 85.5 110 54.5
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 2.6e-15 85.5 110 50.9
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 5.8e-15 84.3 110 53.6
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 7.6e-15 84.0 108 53.7
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 7.6e-15 84.0 106 54.7
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 9.9e-15 83.6 108 53.7
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 9.9e-15 83.6 114 50.0
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.3e-14 83.2 106 56.6
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.3e-14 83.2 106 56.6
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.3e-14 83.2 108 53.7
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.7e-14 82.8 106 54.7
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 2.2e-14 82.4 108 50.9
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 2.2e-14 82.4 108 52.8
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 2.9e-14 82.0 112 53.6
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 2.9e-14 82.0 112 50.0
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 2.9e-14 82.0 112 50.0
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.9e-14 82.0 110 51.8
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 4.9e-14 81.3 106 51.9
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 6.4e-14 80.9 112 47.3
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 8.4e-14 80.5 112 49.1
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.1e-13 80.1 111 51.4
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.1e-13 80.1 110 47.3
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 1.4e-13 79.7 111 51.4
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.4e-13 79.7 111 51.4
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.4e-13 79.7 109 48.6
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.9e-13 79.3 115 52.2
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.9e-13 79.3 111 55.9
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 1.9e-13 79.3 111 50.5
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 2.4e-13 79.0 107 49.5
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 3.2e-13 78.6 110 48.2
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 3.2e-13 78.6 109 48.6
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.2e-13 78.2 109 48.6
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 4.2e-13 78.2 104 47.1
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 5.4e-13 77.8 109 50.5
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 5.4e-13 77.8 109 46.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 5.4e-13 77.8 109 47.7
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 5.4e-13 77.8 105 53.3
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 7.1e-13 77.4 113 46.9
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 7.1e-13 77.4 111 48.6
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.2e-12 76.6 108 51.9
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.2e-12 76.6 108 46.3
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 1.6e-12 76.3 109 50.5
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-12 75.9 108 49.1
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 4.6e-12 74.7 111 45.9
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 4.6e-12 74.7 107 52.3
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 4.6e-12 74.7 108 49.1
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.0e-12 74.3 89 55.1
A03p43270 Brassica napus HOM05D046874 ORTHO05D042050 1.0e-11 73.6 60 66.7
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.0e-11 73.6 107 48.6
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.3e-11 73.2 118 45.8
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.3e-11 73.2 109 47.7
BcaB04g19135 Brassica carinata HOM05D004268 ORTHO05D004958 2.3e-11 72.4 108 48.1
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 3.0e-11 72.0 115 44.3
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 3.9e-11 71.6 109 54.1
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 6.6e-11 70.9 111 47.7
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 8.7e-11 70.5 110 49.1
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 8.7e-11 70.5 113 46.0
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 8.7e-11 70.5 110 46.4
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.1e-10 70.1 109 48.6
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.5e-10 69.7 109 47.7
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 2.5e-10 68.9 109 50.5
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 2.5e-10 68.9 108 46.3
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 3.3e-10 68.6 110 46.4
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 5.6e-10 67.8 80 52.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 7.3e-10 67.4 110 45.5
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.3e-09 66.6 112 42.9
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 1.6e-09 66.2 111 44.1
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.6e-09 66.2 106 47.2
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.1e-09 65.9 39 79.5
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 2.8e-09 65.5 102 47.1
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 6.2e-09 64.3 110 43.6
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 8.1e-09 63.9 113 46.0
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.4e-08 63.2 110 46.4
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.8e-08 62.8 98 50.0
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 1.8e-08 62.8 108 45.4
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 2.4e-08 62.4 110 45.5
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 4.0e-08 61.6 86 52.3
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 4.0e-08 61.6 40 75.0
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 5.3e-08 61.2 108 44.4
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 9.0e-08 60.5 115 39.1
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.2e-07 60.1 114 43.9
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 5.8e-07 57.8 96 46.9
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 5.8e-07 57.8 39 74.4
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 5.8e-07 57.8 40 75.0
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 5.8e-07 57.8 119 37.8
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 2.2e-06 55.8 102 45.1
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 3.8e-06 55.1 121 38.8
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 4.9e-06 54.7 118 39.8
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 4.9e-06 54.7 118 41.5
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 6.4e-06 54.3 118 40.7


User provided reference genes

Program Settings