Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35752H Brassica oleracea HOM05D021015 ORTHO05D023955 7.8e-70 267.3 166 100.0
C06p06420 Brassica napus HOM05D021015 ORTHO05D023955 9.5e-68 260.4 166 95.2
BolC1t03783H Brassica oleracea HOM05D021015 ORTHO05D023955 2.8e-67 258.8 166 92.8
C01p38210 Brassica napus HOM05D021015 ORTHO05D023955 1.2e-62 243.4 166 90.4
BolC9t58533H Brassica oleracea HOM05D001045 ORTHO05D001542 2.7e-22 109.4 154 57.1
BcaB01g04858 Brassica carinata HOM05D001045 ORTHO05D001542 1.0e-21 107.5 154 60.4
BcaC08g43292 Brassica carinata HOM05D021015 ORTHO05D023955 4.3e-20 102.1 85 85.9
Sp6g24890 Schrenkiella parvula HOM05D001045 ORTHO05D001542 1.3e-19 100.5 155 50.3
BraA10t44091Z Brassica rapa HOM05D001045 ORTHO05D001542 1.4e-18 97.1 158 55.7
BcaC03g13681 Brassica carinata HOM05D001045 ORTHO05D001542 2.4e-18 96.3 158 56.3
BNapus_Darmor_BZH_scaffold_38p02360 Brassica napus HOM05D001045 ORTHO05D001542 2.4e-18 96.3 158 56.3
A10p20200 Brassica napus HOM05D001045 ORTHO05D001542 4.5e-17 92.0 158 48.1
Carub.0006s1786 Capsella rubella HOM05D001045 ORTHO05D001542 1.0e-16 90.9 156 57.7
BcaB05g23383 Brassica carinata HOM05D001045 ORTHO05D001542 3.8e-16 89.0 160 51.2
Carub.0006s1062 Capsella rubella HOM05D001045 ORTHO05D001542 3.8e-16 89.0 159 41.5
BraA03t10268Z Brassica rapa HOM05D001045 ORTHO05D001542 1.1e-15 87.4 164 55.5
C09p64760 Brassica napus HOM05D001045 ORTHO05D001542 3.2e-15 85.9 167 40.7
Thhalv10014599m.g Eutrema salsugineum HOM05D001045 ORTHO05D001542 3.2e-15 85.9 160 48.1
A03p09500 Brassica napus HOM05D001045 ORTHO05D001542 5.5e-15 85.1 156 55.1
BcaC04g24212 Brassica carinata HOM05D001045 ORTHO05D001542 7.2e-15 84.7 156 46.8
C09p56790 Brassica napus HOM05D001045 ORTHO05D001542 7.2e-15 84.7 156 46.8
CARHR193390 Cardamine hirsuta HOM05D001045 ORTHO05D001542 1.2e-14 84.0 158 44.9
THA.LOC104800475 Tarenaya hassleriana HOM05D001045 ORTHO05D001542 6.1e-14 81.6 173 45.7
THA.LOC104816957 Tarenaya hassleriana HOM05D001045 ORTHO05D001542 6.1e-14 81.6 176 37.5
A10p25690 Brassica napus HOM05D001045 ORTHO05D001542 1.0e-13 80.9 171 42.1
BraA10t44634Z Brassica rapa HOM05D001045 ORTHO05D001542 1.8e-13 80.1 171 42.1
A02p05590 Brassica napus HOM05D001045 ORTHO05D001542 3.9e-13 79.0 159 50.9
BraA02t05511Z Brassica rapa HOM05D001045 ORTHO05D001542 3.9e-13 79.0 159 50.9
BcaNung06327 Brassica carinata HOM05D001045 ORTHO05D001542 5.1e-13 78.6 171 40.9
BolC9t59307H Brassica oleracea HOM05D001045 ORTHO05D001542 8.8e-13 77.8 171 40.9
AT5G12110 Arabidopsis thaliana HOM05D001045 ORTHO05D001542 1.5e-12 77.0 179 39.7
AL6G22890 Arabidopsis lyrata HOM05D001045 ORTHO05D001542 2.0e-12 76.6 182 38.5
DCAR_018945 Daucus carota HOM05D001045 ORTHO05D001542 2.0e-12 76.6 161 38.5
AT5G19510 Arabidopsis thaliana HOM05D001045 ORTHO05D001542 4.3e-12 75.5 159 51.6
BolC2t06959H Brassica oleracea HOM05D001045 ORTHO05D001542 7.4e-12 74.7 164 53.0
Atru.chr3.2826 Acer truncatum HOM05D001045 ORTHO05D001542 1.7e-11 73.6 157 38.2
Cpa.g.sc34.208 Carica papaya HOM05D001045 ORTHO05D001542 3.7e-11 72.4 198 35.4
BcaB01g05149 Brassica carinata HOM05D001045 ORTHO05D001542 1.4e-10 70.5 61 72.1
Nitab4.5_0002567g0110 Nicotiana tabacum HOM05D001045 ORTHO05D001542 2.4e-10 69.7 130 42.3
PSO384G2374 Papaver somniferum HOM05D001045 ORTHO05D001542 2.4e-10 69.7 175 40.0
HanXRQChr13g0401491 Helianthus annuus HOM05D001045 ORTHO05D001542 4.1e-10 68.9 178 36.5
C03p11080 Brassica napus HOM05D001045 ORTHO05D001542 6.9e-10 68.2 158 51.3
BolC3t13578H Brassica oleracea HOM05D001045 ORTHO05D001542 6.9e-10 68.2 158 51.3
Manes.01G176200 Manihot esculenta HOM05D001045 ORTHO05D001542 6.9e-10 68.2 158 38.0
AL6G31020 Arabidopsis lyrata HOM05D001045 ORTHO05D001542 9.1e-10 67.8 161 50.3
Dinv35900 Davidia involucrata HOM05D001045 ORTHO05D001542 9.1e-10 67.8 171 33.9
Rhsim13G0203400 Rhododendron simsii HOM05D001045 ORTHO05D001542 9.1e-10 67.8 194 35.1
Phvul.006G019800 Phaseolus vulgaris HOM05D001045 ORTHO05D001542 1.2e-09 67.4 177 34.5
Eucgr.J00657 Eucalyptus grandis HOM05D001045 ORTHO05D001542 1.5e-09 67.0 212 30.7
Thecc.09G256800 Theobroma cacao HOM05D001045 ORTHO05D001542 2.0e-09 66.6 172 36.0
GSVIVG01037374001 Vitis vinifera HOM05D001045 ORTHO05D001542 2.6e-09 66.2 159 37.1
PSO339G1070 Papaver somniferum HOM05D001045 ORTHO05D001542 3.4e-09 65.9 175 39.4
Actinidia22481 Actinidia chinensis HOM05D001045 ORTHO05D001542 4.5e-09 65.5 177 35.6
Hma1.2p1_1711F.1_g298700 Hydrangea macrophylla HOM05D001045 ORTHO05D001542 4.5e-09 65.5 162 35.2
unitig_22.g6179 Utricularia gibba HOM05D001045 ORTHO05D001542 4.5e-09 65.5 156 35.9
Glyma.14G039100 Glycine max HOM05D001045 ORTHO05D001542 5.9e-09 65.1 175 37.7
Lsat_1_v5_gn_6_26180 Lactuca sativa HOM05D001045 ORTHO05D001542 5.9e-09 65.1 160 36.9
Lalb_Chr17g0347711 Lupinus albus HOM05D001045 ORTHO05D001542 5.9e-09 65.1 174 33.9
Cfa010155 Carpinus fangiana HOM05D001045 ORTHO05D001542 7.7e-09 64.7 158 35.4
Glyma.02G276600 Glycine max HOM05D001045 ORTHO05D001542 7.7e-09 64.7 175 37.7
Phvul.008G204800 Phaseolus vulgaris HOM05D001045 ORTHO05D001542 7.7e-09 64.7 172 36.6
Gohir.A05G071900 Gossypium hirsutum HOM05D001045 ORTHO05D001542 1.0e-08 64.3 192 32.8
Psat0s1231g0040 Pisum sativum HOM05D001045 ORTHO05D001542 1.0e-08 64.3 175 36.0
VMungo0647G0939 Vigna mungo HOM05D001045 ORTHO05D001542 1.0e-08 64.3 175 37.1
TAR623G1682 Trochodendron aralioides HOM05D001045 ORTHO05D001542 1.3e-08 63.9 178 34.3
CANSAT54G1902 Cannabis sativa HOM05D001045 ORTHO05D001542 2.9e-08 62.8 173 32.9
Gohir.A13G220400 Gossypium hirsutum HOM05D001045 ORTHO05D001542 3.8e-08 62.4 157 38.2
RcHm_v2.0_Chr4g0419721 Rosa chinensis HOM05D001045 ORTHO05D001542 3.8e-08 62.4 176 35.2
Glyma.13G073200 Glycine max HOM05D001045 ORTHO05D001542 5.0e-08 62.0 197 32.5
CiPaw.14G107700 Carya illinoinensis HOM05D001045 ORTHO05D001542 6.5e-08 61.6 176 31.8
Haze_23542 Corylus avellana HOM05D001045 ORTHO05D001542 6.5e-08 61.6 162 34.6
Gohir.D13G224400 Gossypium hirsutum HOM05D001045 ORTHO05D001542 6.5e-08 61.6 157 46.5
Gorai.013G255200 Gossypium raimondii HOM05D001045 ORTHO05D001542 6.5e-08 61.6 157 46.5
Actinidia12282 Actinidia chinensis HOM05D001045 ORTHO05D001542 8.5e-08 61.2 194 35.1
Aqoxy7G01944 Aquilegia oxysepala HOM05D001045 ORTHO05D001542 8.5e-08 61.2 181 32.6
Lalb_Chr04g0249441 Lupinus albus HOM05D001045 ORTHO05D001542 1.1e-07 60.8 197 31.5
vmacro04090 Vaccinium macrocarpon HOM05D001045 ORTHO05D001542 1.1e-07 60.8 171 36.3
Nn7g37064 Nelumbo nucifera HOM05D001045 ORTHO05D001542 1.4e-07 60.5 178 33.7
Migut.N02399 Erythranthe guttata HOM05D001045 ORTHO05D001542 1.9e-07 60.1 199 32.7
Gohir.D05G074700 Gossypium hirsutum HOM05D001045 ORTHO05D001542 2.5e-07 59.7 192 33.9
Gorai.009G076000 Gossypium raimondii HOM05D001045 ORTHO05D001542 2.5e-07 59.7 192 33.9
Oeu063624.1 Olea europaea HOM05D001045 ORTHO05D001542 2.5e-07 59.7 123 41.5
Solyc11g072190.2 Solanum lycopersicum HOM05D001045 ORTHO05D001542 2.5e-07 59.7 172 37.2
TWI75G0894 Tripterygium wilfordii HOM05D001045 ORTHO05D001542 3.2e-07 59.3 159 36.5
MSTRG.17647 Avicennia marina HOM05D001045 ORTHO05D001542 5.5e-07 58.5 123 39.8
BcaB05g22597 Brassica carinata HOM05D021015 ORTHO05D094200 7.2e-07 58.2 54 68.5
ECA233G3652 Erigeron canadensis HOM05D001045 ORTHO05D001542 7.2e-07 58.2 198 31.3
Duzib150G0472 Durio zibethinus HOM05D001045 ORTHO05D001542 9.4e-07 57.8 157 36.9
TWI79G1542 Tripterygium wilfordii HOM05D001045 ORTHO05D001542 1.2e-06 57.4 161 32.3
Aa31LG3G15120 Aethionema arabicum HOM05D001045 ORTHO05D001542 2.1e-06 56.6 177 42.9
Medtr5g088660 Medicago truncatula HOM05D001045 ORTHO05D001542 2.1e-06 56.6 174 35.1
arahy.Tifrunner.gnm1.ann1.E3HYWR Arachis hypogaea HOM05D001045 ORTHO05D001542 3.6e-06 55.8 196 35.2
FvH4_4g13950 Fragaria vesca HOM05D001045 ORTHO05D001542 3.6e-06 55.8 72 45.8
FAN22G2283 Fragaria x ananassa HOM05D001045 ORTHO05D001542 3.6e-06 55.8 72 45.8
TPR.G16417 Trifolium pratense HOM05D001045 ORTHO05D001542 3.6e-06 55.8 143 35.0
MD02G1271700 Malus domestica HOM05D001045 ORTHO05D001542 4.7e-06 55.5 207 28.5
Ca_06173_v3 Cicer arietinum L. HOM05D001045 ORTHO05D001542 7.9e-06 54.7 175 35.4
Nitab4.5_0002416g0070 Nicotiana tabacum HOM05D001045 ORTHO05D001542 7.9e-06 54.7 74 50.0


User provided reference genes

Program Settings