Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 1.5e-43 179.9 114 100.0
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 1.5e-43 179.9 114 100.0
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 1.5e-43 179.9 114 100.0
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 4.5e-40 168.3 114 93.9
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 9.5e-38 160.6 114 89.5
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 4.1e-33 145.2 115 67.0
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 9.5e-30 134.0 117 62.4
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 3.1e-28 129.0 118 62.7
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 8.9e-28 127.5 117 76.1
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 5.8e-27 124.8 78 82.1
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 7.0e-25 117.9 114 77.2
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 5.6e-22 108.2 71 74.6
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.1e-17 94.0 70 67.1
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.4e-17 92.8 81 61.7
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 3.2e-17 92.4 70 65.7
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 4.1e-17 92.0 70 64.3
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 5.4e-17 91.7 70 64.3
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 7.1e-17 91.3 70 64.3
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 1.6e-16 90.1 70 64.3
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 1.6e-16 90.1 70 64.3
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 3.5e-16 89.0 70 62.9
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 4.6e-16 88.6 75 62.7
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 6.0e-16 88.2 78 57.7
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 1.0e-15 87.4 75 60.0
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 1.0e-15 87.4 70 62.9
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 1.0e-15 87.4 75 60.0
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 1.0e-15 87.4 75 60.0
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 1.0e-15 87.4 75 60.0
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 1.7e-15 86.7 75 58.7
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 1.7e-15 86.7 75 58.7
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 3.0e-15 85.9 75 58.7
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 3.9e-15 85.5 75 58.7
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 3.9e-15 85.5 75 58.7
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 3.9e-15 85.5 75 58.7
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 3.9e-15 85.5 75 57.3
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 6.6e-15 84.7 75 57.3
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 6.6e-15 84.7 75 57.3
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 8.6e-15 84.3 75 57.3
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 1.5e-14 83.6 75 56.0
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.9e-14 83.2 75 56.0
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 1.9e-14 83.2 68 61.8
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 1.9e-14 83.2 75 57.3
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 2.5e-14 82.8 68 55.9
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 2.5e-14 82.8 68 58.8
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 5.6e-14 81.6 68 58.8
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 5.6e-14 81.6 75 60.0
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 1.2e-13 80.5 68 60.3
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 1.2e-13 80.5 68 54.4
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.2e-13 80.5 75 58.7
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 1.6e-13 80.1 71 59.2
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 1.6e-13 80.1 83 50.6
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 2.1e-13 79.7 67 59.7
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 2.1e-13 79.7 68 55.9
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 2.8e-13 79.3 70 58.6
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 2.8e-13 79.3 68 60.3
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 2.8e-13 79.3 68 60.3
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 2.8e-13 79.3 78 53.8
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 3.6e-13 79.0 75 57.3
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 4.7e-13 78.6 69 58.0
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 4.7e-13 78.6 74 47.3
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 6.2e-13 78.2 67 58.2
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 6.2e-13 78.2 79 51.9
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 6.2e-13 78.2 66 59.1
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 8.1e-13 77.8 68 51.5
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 8.1e-13 77.8 68 57.4
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 8.1e-13 77.8 67 53.7
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 8.1e-13 77.8 67 53.7
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 8.1e-13 77.8 67 53.7
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 8.1e-13 77.8 67 53.7
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 8.1e-13 77.8 67 53.7
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 8.1e-13 77.8 76 48.7
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 8.1e-13 77.8 76 53.9
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 8.1e-13 77.8 69 60.9
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 1.1e-12 77.4 68 58.8
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.1e-12 77.4 68 58.8
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 1.1e-12 77.4 78 53.8
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 1.4e-12 77.0 81 54.3
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 1.4e-12 77.0 78 55.1
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 1.4e-12 77.0 67 56.7
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.8e-12 76.6 67 53.7
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 1.8e-12 76.6 68 51.5
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 2.3e-12 76.3 68 55.9
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 2.3e-12 76.3 68 57.4
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 2.3e-12 76.3 68 58.8
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 2.3e-12 76.3 78 55.1
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 2.3e-12 76.3 68 55.9
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 3.1e-12 75.9 89 44.9
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 3.1e-12 75.9 89 44.9
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 3.1e-12 75.9 66 57.6
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 3.1e-12 75.9 67 56.7
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 3.1e-12 75.9 76 51.3
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 3.1e-12 75.9 66 51.5
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 4.0e-12 75.5 68 54.4
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 5.2e-12 75.1 68 57.4
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 5.2e-12 75.1 68 54.4
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 5.2e-12 75.1 68 50.0
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 5.2e-12 75.1 68 51.5
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 6.8e-12 74.7 66 50.0
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 6.8e-12 74.7 68 52.9
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 8.9e-12 74.3 70 50.0
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 8.9e-12 74.3 68 50.0
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 1.5e-11 73.6 68 52.9
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 1.5e-11 73.6 67 56.7
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 2.0e-11 73.2 77 54.5
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 2.0e-11 73.2 68 52.9
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 2.6e-11 72.8 67 52.2
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 3.4e-11 72.4 70 52.9
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 3.4e-11 72.4 70 52.9
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 3.4e-11 72.4 68 54.4
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 3.4e-11 72.4 65 56.9
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 3.4e-11 72.4 68 51.5
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 3.4e-11 72.4 68 51.5
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 4.4e-11 72.0 66 54.5
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 4.4e-11 72.0 68 48.5
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 4.4e-11 72.0 68 51.5
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 4.4e-11 72.0 68 48.5
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 5.8e-11 71.6 66 48.5
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 5.8e-11 71.6 66 48.5
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 9.9e-11 70.9 68 54.4
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 9.9e-11 70.9 67 52.2
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 9.9e-11 70.9 71 49.3
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 1.3e-10 70.5 68 50.0
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 1.7e-10 70.1 65 53.8
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 1.7e-10 70.1 68 52.9
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 3.8e-10 68.9 68 52.9
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 4.9e-10 68.6 70 50.0
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 8.4e-10 67.8 71 46.5
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 8.4e-10 67.8 68 48.5
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 1.1e-09 67.4 65 52.3
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.4e-09 67.0 68 50.0
TAR629G2714 Trochodendron aralioides HOM05D004357 ORTHO05D005064 1.4e-09 67.0 68 50.0
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 2.4e-09 66.2 68 48.5
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 3.2e-09 65.9 71 52.1
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 3.2e-09 65.9 67 46.3
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 5.4e-09 65.1 68 48.5
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 5.4e-09 65.1 68 48.5
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 5.4e-09 65.1 68 48.5
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 1.6e-08 63.5 77 46.8
BolC3t14084H Brassica oleracea HOM05D004357 ORTHO05D005064 1.6e-08 63.5 66 53.0
AUR62020398 Chenopodium quinoa HOM05D004357 ORTHO05D005064 2.7e-08 62.8 68 50.0
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 2.7e-08 62.8 66 51.5
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 4.6e-08 62.0 77 39.0
Nn1g03453 Nelumbo nucifera HOM05D004357 ORTHO05D005064 4.6e-08 62.0 78 39.7
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.0e-07 60.8 71 43.7
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 1.0e-07 60.8 70 47.1
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 1.3e-07 60.5 80 41.2
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 1.3e-07 60.5 78 42.3
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 3.0e-07 59.3 78 42.3
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 3.0e-07 59.3 55 56.4
Gohir.D05G372800 Gossypium hirsutum HOM05D004357 ORTHO05D005064 3.9e-07 58.9 61 50.8
Gorai.009G441300 Gossypium raimondii HOM05D004357 ORTHO05D005064 6.6e-07 58.2 61 50.8
Prupe.4G218300 Prunus persica HOM05D004357 ORTHO05D005064 3.3e-06 55.8 68 39.7


User provided reference genes

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