Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 0.0e+00 1156.4 562 100.0
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1138.6 562 98.2
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 0.0e+00 1134.0 562 97.5
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 0.0e+00 1116.7 562 95.6
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1076.6 521 99.8
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 8.5e-310 1066.2 562 93.1
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 5.1e-307 1057.0 562 89.7
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 6.3e-305 1050.0 562 88.3
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 9.1e-304 1046.2 562 88.3
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 2.0e-303 1045.0 562 88.1
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 2.0e-303 1045.0 562 88.1
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 2.0e-303 1045.0 562 88.1
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 2.0e-303 1045.0 562 88.1
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.0e-302 1042.7 562 87.5
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 2.2e-302 1041.6 562 87.4
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.4e-301 1038.9 562 87.0
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 1.4e-301 1038.9 562 86.8
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 562 87.0
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 2.7e-300 1034.6 562 87.0
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 6.1e-300 1033.5 562 87.0
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 6.1e-300 1033.5 562 87.0
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 7.9e-300 1033.1 562 86.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.0e-299 1032.7 562 86.8
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.8e-299 1031.9 562 86.5
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.5e-290 1002.3 562 83.6
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 564 84.9
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 4.5e-287 990.7 564 84.2
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 1.7e-286 988.8 564 84.8
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 2.2e-286 988.4 561 84.7
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 2.9e-286 988.0 564 84.6
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 6.5e-286 986.9 564 83.9
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 8.5e-286 986.5 565 83.0
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.1e-285 986.1 562 82.9
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.5e-285 984.9 565 83.7
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 2.5e-285 984.9 565 82.3
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 5.5e-285 983.8 562 83.3
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 9.4e-285 983.0 565 83.4
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.6e-284 982.2 564 83.9
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 6.1e-284 980.3 564 82.4
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.1e-284 980.3 565 83.5
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 6.1e-284 980.3 565 83.2
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 6.1e-284 980.3 565 83.9
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.3e-283 978.4 565 83.4
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 2.3e-283 978.4 564 83.2
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 2.3e-283 978.4 558 84.1
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 3.0e-283 978.0 564 83.5
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 4.0e-283 977.6 564 82.6
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 5.2e-283 977.2 562 82.2
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 6.8e-283 976.9 564 82.8
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 8.8e-283 976.5 564 83.2
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.5e-282 975.7 564 83.0
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.0e-282 975.3 564 83.0
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 82.8
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 82.8
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 4.4e-282 974.2 562 82.9
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 7.5e-282 973.4 564 81.7
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 7.5e-282 973.4 564 81.7
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.7e-281 972.2 564 81.4
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 4.8e-281 970.7 564 82.1
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 4.8e-281 970.7 564 82.8
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 6.3e-281 970.3 564 82.8
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 8.3e-281 969.9 564 82.8
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 8.3e-281 969.9 564 81.7
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.4e-280 969.1 564 81.9
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.8e-280 968.8 567 82.4
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.8e-280 968.8 564 82.8
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 4.1e-280 967.6 564 81.7
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 9.1e-280 966.5 564 82.3
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 2.7e-279 964.9 561 81.3
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 2.7e-279 964.9 564 82.3
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 5.9e-279 963.8 564 82.4
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 1.3e-278 962.6 565 81.9
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.3e-278 962.6 565 81.1
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.3e-278 962.6 565 81.1
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 2.2e-278 961.8 565 81.9
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.8e-278 961.1 563 81.3
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.0e-278 960.7 564 81.6
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.1e-277 959.5 564 81.9
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.5e-277 959.1 556 81.7
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.9e-277 958.7 562 81.1
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 3.2e-277 958.0 563 80.8
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 5.5e-277 957.2 564 81.4
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 7.2e-277 956.8 563 80.6
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.0e-275 953.0 562 80.8
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 3.0e-275 951.4 562 79.5
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.5e-274 949.1 551 82.8
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.5e-274 949.1 563 80.5
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.5e-274 949.1 564 80.1
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 2.0e-274 948.7 559 80.7
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 2.0e-274 948.7 559 80.5
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 2.6e-274 948.3 564 80.9
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.7e-273 945.7 564 78.5
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.8e-273 944.9 562 79.2
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 3.7e-273 944.5 564 80.0
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 4.8e-273 944.1 562 79.5
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 8.3e-273 943.3 559 80.0
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 9.1e-272 939.9 561 79.5
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.7e-271 938.3 550 81.1
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 2.7e-271 938.3 564 79.1
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 3.5e-271 937.9 553 80.1
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 3.5e-271 937.9 564 79.4
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 4.5e-271 937.6 562 79.2
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-270 936.0 550 81.1
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 2.9e-270 934.9 551 81.1
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.0e-270 934.1 553 79.9
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 1.5e-269 932.6 568 78.9
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 3.3e-269 931.4 564 79.6
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 5.5e-269 930.6 551 79.9
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.6e-268 929.1 553 79.4
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.8e-267 925.6 566 79.0
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 3.0e-267 924.9 566 79.0
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 6.8e-267 923.7 566 78.8
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 8.9e-267 923.3 563 78.2
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 4.9e-265 917.5 561 78.8
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 7.0e-264 913.7 562 76.2
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.7e-263 911.8 562 76.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.7e-263 911.8 534 80.5
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 3.5e-263 911.4 566 78.1
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 5.6e-261 904.0 562 75.1
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.8e-259 897.1 564 75.9
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.2e-258 896.3 553 77.0
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.5e-255 884.8 565 77.0
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 7.8e-255 883.6 552 75.7
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 6.6e-254 880.6 559 74.4
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 4.3e-253 877.9 562 74.2
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 4.3e-253 877.9 554 74.7
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.6e-252 875.9 554 74.2
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 8.9e-251 870.2 564 72.0
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 5.8e-250 867.5 553 74.5
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 7.1e-248 860.5 561 72.5
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 3.0e-246 855.1 562 72.1
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 5.1e-246 854.4 570 70.2
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 4.0e-243 844.7 562 71.9
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.4e-240 836.3 562 70.6
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.6e-236 822.8 562 70.1
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 1.7e-233 812.8 565 69.4
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.4e-232 808.9 558 72.8
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 7.1e-232 807.4 565 69.0
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.0e-226 789.3 466 78.5
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 9.6e-213 743.8 425 85.2
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.0e-198 697.2 425 78.1
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.4e-195 686.0 562 62.6
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.1e-192 677.2 561 61.3
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.5e-176 622.9 373 78.0
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.1e-171 605.9 545 54.5
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 6.5e-161 571.6 526 51.0
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 5.2e-158 562.0 330 78.8
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.3e-156 557.4 418 68.2
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 8.3e-156 554.7 488 52.5
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 9.2e-147 524.6 293 81.2
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 5.8e-141 505.4 414 58.2
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 1.9e-131 473.8 315 72.1
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.2e-124 450.3 550 46.7
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.1e-123 446.0 557 46.5
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.7e-122 443.4 466 53.4
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-111 407.5 546 47.1
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.6e-98 362.8 214 83.2
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 2.2e-79 300.8 154 92.2
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 2.8e-79 300.4 154 92.2
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 8.2e-79 298.9 482 36.1
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 2.2e-63 247.7 166 70.5
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.0e-48 198.0 117 80.3
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.6e-45 188.3 133 72.2
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 5.0e-44 183.3 166 61.4
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-43 181.4 166 61.4
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 3.2e-43 180.6 166 61.4
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.2e-43 179.5 128 71.9
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 3.6e-42 177.2 166 60.8
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 6.1e-42 176.4 117 68.4
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 3.3e-35 154.1 314 30.9
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 7.5e-32 142.9 210 42.4
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 4.9e-31 140.2 493 26.0
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.0e-28 132.5 87 69.0
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 8.6e-28 129.4 90 65.6
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 8.0e-26 122.9 181 44.2
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 2.6e-24 117.9 59 88.1
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 9.8e-24 115.9 76 65.8
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 7.0e-22 109.8 166 43.4
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 9.2e-22 109.4 85 58.8
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 1.3e-12 79.0 46 71.7
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 8.4e-07 59.7 32 84.4
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 8.4e-07 59.7 32 84.4
C03p50670 Brassica napus HOM05D003778 ORTHO05D004418 3.2e-06 57.8 32 81.2
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 7.1e-06 56.6 40 75.0


User provided reference genes

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