Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 9.5e-92 340.1 167 100.0
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 9.5e-92 340.1 167 100.0
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 9.5e-92 340.1 167 100.0
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 9.5e-92 340.1 167 100.0
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 9.5e-92 340.1 167 100.0
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 5.2e-90 334.3 167 97.6
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 1.3e-88 329.7 167 95.8
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 6.4e-88 327.4 167 95.2
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 1.9e-87 325.9 167 95.2
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 3.5e-86 321.6 167 93.4
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 1.7e-80 302.8 164 87.8
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 3.8e-64 248.4 169 70.4
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 3.2e-63 245.4 164 66.5
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 2.7e-62 242.3 162 65.4
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 6.0e-62 241.1 157 68.8
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 7.9e-62 240.7 164 66.5
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 1.0e-61 240.4 164 64.6
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 1.3e-61 240.0 161 67.1
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 1.8e-61 239.6 157 68.2
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 5.1e-61 238.0 161 67.7
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 5.1e-61 238.0 161 68.3
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 8.7e-61 237.3 161 67.7
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 1.1e-60 236.9 162 67.3
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 2.5e-60 235.7 161 67.1
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 3.3e-60 235.3 157 68.2
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 4.3e-60 235.0 164 63.4
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 5.6e-60 234.6 161 65.8
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 7.4e-60 234.2 161 66.5
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 7.4e-60 234.2 165 64.8
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 7.4e-60 234.2 161 66.5
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 7.4e-60 234.2 161 67.1
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 9.6e-60 233.8 162 64.2
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 9.6e-60 233.8 162 64.8
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 1.3e-59 233.4 161 65.2
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.3e-59 233.4 161 67.1
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 2.8e-59 232.3 161 65.2
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 3.7e-59 231.9 161 65.2
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 3.7e-59 231.9 166 62.0
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 3.7e-59 231.9 161 64.6
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 1.8e-58 229.6 161 65.2
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 1.8e-58 229.6 161 64.0
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 3.1e-58 228.8 166 65.1
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 4.0e-58 228.4 161 64.0
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 4.0e-58 228.4 161 64.0
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 6.9e-58 227.6 161 64.0
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 6.9e-58 227.6 161 63.4
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 9.0e-58 227.3 161 65.8
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 9.0e-58 227.3 159 63.5
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 1.2e-57 226.9 161 63.4
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 1.5e-57 226.5 161 63.4
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 1.5e-57 226.5 161 64.0
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 1.5e-57 226.5 164 62.8
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.0e-57 226.1 161 62.7
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.6e-57 225.7 162 62.3
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 2.6e-57 225.7 161 64.6
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 2.6e-57 225.7 161 64.6
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 2.6e-57 225.7 161 62.1
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 3.4e-57 225.3 161 62.7
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 3.4e-57 225.3 161 62.7
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 3.4e-57 225.3 161 62.1
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 4.5e-57 224.9 161 62.7
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 4.5e-57 224.9 161 63.4
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 4.5e-57 224.9 161 63.4
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 4.5e-57 224.9 161 64.0
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 4.5e-57 224.9 161 64.0
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 5.8e-57 224.6 161 62.7
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 5.8e-57 224.6 163 64.4
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 7.6e-57 224.2 161 64.6
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 9.9e-57 223.8 166 60.2
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 1.3e-56 223.4 161 62.7
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 1.3e-56 223.4 161 61.5
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 1.3e-56 223.4 161 64.0
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.7e-56 223.0 161 63.4
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 2.2e-56 222.6 161 64.0
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 3.8e-56 221.9 161 62.7
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 3.8e-56 221.9 161 64.0
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 4.9e-56 221.5 161 62.7
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 4.9e-56 221.5 161 62.1
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 4.9e-56 221.5 157 62.4
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 6.4e-56 221.1 161 61.5
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 8.4e-56 220.7 161 61.5
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 8.4e-56 220.7 167 61.1
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.1e-55 220.3 161 62.7
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 1.4e-55 219.9 161 63.4
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 2.4e-55 219.2 159 61.6
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 4.2e-55 218.4 161 60.2
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 3.5e-54 215.3 161 59.6
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 3.5e-54 215.3 157 61.1
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 4.6e-54 214.9 161 62.1
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 2.3e-53 212.6 155 64.5
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 3.3e-52 208.8 164 57.3
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 6.2e-51 204.5 162 59.9
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.4e-50 202.6 161 59.0
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 5.3e-50 201.4 171 57.9
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 1.3e-48 196.8 161 59.0
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 1.4e-47 193.4 164 56.1
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 1.2e-46 190.3 133 65.4
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 1.8e-45 186.4 137 62.0
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 2.0e-41 172.9 122 63.1
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 1.7e-40 169.9 156 53.2
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 3.2e-39 165.6 146 50.7
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 1.9e-36 156.4 162 47.5
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 2.8e-35 152.5 111 62.2
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 8.2e-35 151.0 113 60.2
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 2.6e-33 146.0 109 61.5
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 4.5e-33 145.2 109 60.6
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 5.9e-33 144.8 112 58.9
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 7.7e-33 144.4 111 59.5
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 1.7e-32 143.3 160 44.4
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 2.2e-32 142.9 92 67.4
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.4e-29 133.7 107 56.1
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 2.3e-29 132.9 127 52.0
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 2.4e-26 122.9 141 43.3
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 1.6e-22 110.2 197 31.0
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 4.7e-22 108.6 57 87.7
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 5.2e-21 105.1 172 34.3
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 3.1e-18 95.9 163 37.4
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 3.6e-14 82.4 53 69.8
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 3.6e-14 82.4 53 69.8
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 2.0e-12 76.6 53 66.0
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 2.0e-12 76.6 50 70.0
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 3.7e-11 72.4 54 61.1
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.5e-07 59.7 38 63.2


User provided reference genes

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