Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35600H Brassica oleracea HOM05D007571 ORTHO05D009439 7.5e-54 214.2 158 100.0
BcaC08g43171 Brassica carinata HOM05D007571 ORTHO05D009439 1.3e-42 176.8 158 80.4
BcaB07g33447 Brassica carinata HOM05D007571 ORTHO05D009439 7.2e-41 171.0 160 78.1
A06p03470 Brassica napus HOM05D007571 ORTHO05D009439 9.5e-41 170.6 160 78.8
BraA06t23555Z Brassica rapa HOM05D007571 ORTHO05D009439 9.5e-41 170.6 160 78.8
C06p04720 Brassica napus HOM05D007571 ORTHO05D009439 4.7e-40 168.3 160 78.1
Thhalv10011862m.g Eutrema salsugineum HOM05D007571 ORTHO05D009439 4.9e-37 158.3 160 63.1
Sp1g36830 Schrenkiella parvula HOM05D007571 ORTHO05D009439 4.9e-37 158.3 160 64.4
Carub.0001s3916 Capsella rubella HOM05D007571 ORTHO05D009439 5.4e-36 154.8 160 61.9
AL1G57530 Arabidopsis lyrata HOM05D007571 ORTHO05D009439 1.7e-34 149.8 160 60.6
AT1G49975 Arabidopsis thaliana HOM05D007571 ORTHO05D009439 2.3e-34 149.4 160 60.6
THA.LOC104825387 Tarenaya hassleriana HOM05D007571 ORTHO05D009439 1.7e-29 133.3 160 54.4
QL11p029955 Quercus lobata HOM05D007571 ORTHO05D009439 4.9e-29 131.7 162 52.5
Atru.chr5.2324 Acer truncatum HOM05D007571 ORTHO05D009439 2.7e-27 125.9 160 51.2
Ciclev10029547m.g Citrus clementina HOM05D007571 ORTHO05D009439 4.6e-27 125.2 168 50.6
Medtr1g106075 Medicago truncatula HOM05D007571 ORTHO05D009439 1.7e-26 123.2 161 49.7
Haze_10272 Corylus avellana HOM05D007571 ORTHO05D009439 3.0e-26 122.5 161 50.9
TPR.G21146 Trifolium pratense HOM05D007571 ORTHO05D009439 1.5e-25 120.2 159 48.4
Potri.001G292000 Populus trichocarpa HOM05D007571 ORTHO05D009439 3.3e-25 119.0 165 47.9
MELO3C018528.2 Cucumis melo HOM05D007571 ORTHO05D009439 1.2e-24 117.1 160 48.8
TWI59G0511 Tripterygium wilfordii HOM05D007571 ORTHO05D009439 6.2e-24 114.8 163 46.6
CsaV3_7G007730 Cucumis sativus L. HOM05D007571 ORTHO05D009439 1.0e-23 114.0 161 47.2
Sed0007395 Sechium edule HOM05D007571 ORTHO05D009439 1.0e-23 114.0 169 47.9
Duzib052G0547 Durio zibethinus HOM05D007571 ORTHO05D009439 3.1e-23 112.5 175 44.6
MD10G1108300 Malus domestica HOM05D007571 ORTHO05D009439 6.8e-23 111.3 164 48.8
Medtr3g008630 Medicago truncatula HOM05D007571 ORTHO05D009439 6.8e-23 111.3 161 45.3
CANSAT25G0272 Cannabis sativa HOM05D007571 ORTHO05D009439 8.9e-23 110.9 163 48.5
CANSAT25G2750 Cannabis sativa HOM05D007571 ORTHO05D009439 8.9e-23 110.9 163 48.5
Thecc.02G118900 Theobroma cacao HOM05D007571 ORTHO05D009439 1.2e-22 110.5 177 44.6
Sabra16G0182000 Salix brachista HOM05D007571 ORTHO05D009439 4.4e-22 108.6 174 42.0
Eucgr.G01203 Eucalyptus grandis HOM05D007571 ORTHO05D009439 5.8e-22 108.2 162 45.1
Prupe.8G147200 Prunus persica HOM05D007571 ORTHO05D009439 9.8e-22 107.5 163 46.0
Gohir.D12G019350 Gossypium hirsutum HOM05D007571 ORTHO05D009439 1.3e-21 107.1 176 42.0
Glyma.10G256000 Glycine max HOM05D007571 ORTHO05D009439 2.2e-21 106.3 165 45.5
RcHm_v2.0_Chr6g0252541 Rosa chinensis HOM05D007571 ORTHO05D009439 2.2e-21 106.3 163 44.8
Gohir.A12G018900 Gossypium hirsutum HOM05D007571 ORTHO05D009439 3.7e-21 105.5 176 42.0
COL.COLO4_32496 Corchorus olitorius HOM05D007571 ORTHO05D009439 8.3e-21 104.4 169 44.4
FAN20G2923 Fragaria x ananassa HOM05D007571 ORTHO05D009439 8.3e-21 104.4 163 44.2
Lalb_Chr21g0308001 Lupinus albus HOM05D007571 ORTHO05D009439 8.3e-21 104.4 161 47.2
FvH4_2g03581 Fragaria vesca HOM05D007571 ORTHO05D009439 1.1e-20 104.0 163 43.6
PGR042G0328 Punica granatum HOM05D007571 ORTHO05D009439 3.2e-20 102.4 174 42.0
arahy.Tifrunner.gnm1.ann1.A1M8SQ Arachis hypogaea HOM05D007571 ORTHO05D009439 1.2e-19 100.5 156 42.9
ClCG02G007100 Citrullus lanatus HOM05D007571 ORTHO05D009439 1.2e-19 100.5 168 43.5
Lj5g0013426 Lotus japonicus HOM05D007571 ORTHO05D009439 2.0e-19 99.8 154 46.1
CARHR040010 Cardamine hirsuta HOM05D007571 ORTHO05D009439 2.7e-19 99.4 95 58.9
arahy.Tifrunner.gnm1.ann1.I40GDJ Arachis hypogaea HOM05D007571 ORTHO05D009439 6.0e-19 98.2 156 42.3
Phvul.007G046800 Phaseolus vulgaris HOM05D007571 ORTHO05D009439 2.3e-18 96.3 154 44.2
VMungo0720G0585 Vigna mungo HOM05D007571 ORTHO05D009439 8.6e-18 94.4 157 42.7
CSS0048413 Camellia sinensis var. sinensis HOM05D007571 ORTHO05D009439 3.3e-17 92.4 158 44.3
Rhsim05G0092500 Rhododendron simsii HOM05D007571 ORTHO05D009439 4.3e-17 92.0 94 57.4
GSVIVG01037807001 Vitis vinifera HOM05D007571 ORTHO05D009439 4.3e-17 92.0 145 43.4
TAR628G1270 Trochodendron aralioides HOM05D007571 ORTHO05D009439 2.1e-16 89.7 159 42.8
Actinidia04391 Actinidia chinensis HOM05D007571 ORTHO05D009439 4.7e-16 88.6 94 57.4
vmacro19538 Vaccinium macrocarpon HOM05D007571 ORTHO05D009439 4.7e-16 88.6 94 57.4
Aa31LG10G4150 Aethionema arabicum HOM05D007571 ORTHO05D009439 3.1e-15 85.9 86 60.5
Aqoxy6G02559 Aquilegia oxysepala HOM05D007571 ORTHO05D009439 3.1e-15 85.9 93 53.8
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.1e-15 85.9 165 38.8
Actinidia27996 Actinidia chinensis HOM05D007571 ORTHO05D009439 4.0e-15 85.5 150 42.0
Sc05g0005590 Simmondsia chinensis HOM05D007571 ORTHO05D009439 5.2e-15 85.1 93 53.8
CDE04G1832 Ceratophyllum demersum HOM05D007571 ORTHO05D009439 8.9e-15 84.3 95 51.6
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.5e-14 83.6 168 36.9
MBI16_g39621_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 1.5e-14 83.6 93 55.9
MBI16_g43666_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 1.5e-14 83.6 93 55.9
EL10Ac9g22184 Beta vulgaris HOM05D007571 ORTHO05D009439 5.8e-14 81.6 93 51.6
Hund06510 Selenicereus undatus HOM05D007571 ORTHO05D009439 1.3e-13 80.5 93 50.5
CiPaw.05G019300 Carya illinoinensis HOM05D000470 ORTHO05D000348 1.7e-13 80.1 90 53.3
Cc02_g09420 Coffea canephora HOM05D007571 ORTHO05D009439 1.7e-13 80.1 149 42.3
CAN.G1433.5 Capsicum annuum HOM05D007571 ORTHO05D009439 2.2e-13 79.7 151 36.4
AUR62030860 Chenopodium quinoa HOM05D007571 ORTHO05D009439 2.2e-13 79.7 91 50.5
Dinv15820 Davidia involucrata HOM05D007571 ORTHO05D009439 2.2e-13 79.7 90 55.6
ECA238G3778 Erigeron canadensis HOM05D007571 ORTHO05D009439 2.2e-13 79.7 94 53.2
Lsat_1_v5_gn_2_105800 Lactuca sativa HOM05D007571 ORTHO05D009439 2.2e-13 79.7 94 53.2
Ah.01g007010 Amaranthus hybridus HOM05D007571 ORTHO05D009439 2.9e-13 79.3 93 49.5
Oeu024805.1 Olea europaea HOM05D007571 ORTHO05D009439 6.4e-13 78.2 94 52.1
DCAR_028375 Daucus carota HOM05D007571 ORTHO05D009439 8.3e-13 77.8 149 41.6
SalBow6G2573 Salvia bowleyana HOM05D007571 ORTHO05D009439 8.3e-13 77.8 93 50.5
Solyc05g150152.1 Solanum lycopersicum HOM05D007571 ORTHO05D009439 1.1e-12 77.4 94 50.0
Sopen05g033610 Solanum pennellii HOM05D007571 ORTHO05D009439 1.1e-12 77.4 94 50.0
Nn6g34507 Nelumbo nucifera HOM05D007571 ORTHO05D009439 1.4e-12 77.0 94 48.9
Os03g0731100 Oryza sativa ssp. japonica HOM05D007571 ORTHO05D009439 1.9e-12 76.6 93 49.5
PSO541G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 1.9e-12 76.6 93 49.5
HanXRQChr02g0053531 Helianthus annuus HOM05D007571 ORTHO05D009439 2.4e-12 76.3 94 50.0
Migut.F01585 Erythranthe guttata HOM05D007571 ORTHO05D009439 5.4e-12 75.1 94 50.0
PSO675G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 5.4e-12 75.1 93 48.4
Zm00001eb056210 Zea mays HOM05D007571 ORTHO05D009439 5.4e-12 75.1 93 48.4
ATR0739G046 Amborella trichopoda HOM05D007571 ORTHO05D009439 1.2e-11 73.9 93 51.6
Nitab4.5_0017347g0020 Nicotiana tabacum HOM05D007571 ORTHO05D009439 1.6e-11 73.6 94 48.9
PGSC0003DMG400023397 Solanum tuberosum HOM05D007571 ORTHO05D009439 2.1e-11 73.2 95 48.4
MSTRG.417 Avicennia marina HOM05D007571 ORTHO05D009439 2.7e-11 72.8 94 48.9
Nitab4.5_0000687g0180 Nicotiana tabacum HOM05D007571 ORTHO05D009439 3.5e-11 72.4 94 47.9
Peaxi162Scf00519g00423 Petunia axillaris HOM05D007571 ORTHO05D009439 6.0e-11 71.6 94 47.9
SEGI_38446 Sequoiadendron giganteum HOM05D007571 ORTHO05D009439 1.0e-10 70.9 95 47.4
Manes.07G054000 Manihot esculenta HOM05D007571 ORTHO05D009439 3.9e-10 68.9 86 53.5
SGA_v2.0_scaffold62G21311 Striga asiatica HOM05D007002 ORTHO05D008602 5.1e-10 68.6 88 50.0
SalBow6G2452 Salvia bowleyana HOM05D007571 ORTHO05D009439 1.1e-09 67.4 52 63.5
AagrBONN_evm.TU.Sc2ySwM_228.3762 Anthoceros agrestis HOM05D007571 ORTHO05D009439 1.8e-07 60.1 95 40.0
Potri.009G086400 Populus trichocarpa HOM05D007571 ORTHO05D009439 5.8e-06 55.1 83 43.4


User provided reference genes

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