Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 2137.1 1074 100.0
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 2120.1 1074 99.4
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 2097.8 1074 98.4
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 2095.9 1074 98.4
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 2073.9 1075 97.5
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 2012.7 1082 94.7
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1948.7 1088 90.2
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1909.8 1084 89.8
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1906.7 1085 88.8
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1898.2 1083 88.3
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1891.7 1084 88.7
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1834.3 1088 84.7
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1824.3 1084 84.7
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1823.9 1088 84.1
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1817.0 1088 83.8
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1814.3 1087 84.3
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1801.2 1093 83.0
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1800.8 1088 83.5
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1799.6 1084 83.7
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1797.3 1078 83.3
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1795.8 1084 83.6
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1791.2 1084 83.2
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1790.8 1084 83.0
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1790.8 1084 83.2
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1786.5 1084 83.3
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1783.8 1082 83.0
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1777.3 1088 82.4
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1776.5 1090 82.1
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1773.1 1092 81.9
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1771.1 1086 82.6
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1756.9 1142 78.5
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1686.4 1086 77.9
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1666.7 1085 76.3
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1091 77.0
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1665.6 1091 77.0
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1659.4 1090 76.8
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1658.3 1091 76.7
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1647.1 1091 76.0
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1644.8 1086 76.3
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1644.8 1081 77.0
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1644.0 1032 79.2
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1643.2 1088 76.3
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1089 76.5
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1641.7 1085 76.0
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1641.7 1016 79.0
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1637.1 1124 74.5
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1636.3 1086 75.9
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1634.0 1089 76.0
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1634.0 1095 74.7
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1091 74.3
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1631.7 1053 77.6
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1630.2 1067 76.4
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1630.2 1090 75.2
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1630.2 1090 75.7
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1629.8 1071 76.1
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1629.4 1089 76.0
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1626.3 1081 75.2
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1087 74.6
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1623.2 1005 79.3
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1622.4 1097 74.6
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1622.1 1082 75.5
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1620.1 1082 75.8
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1614.0 1080 74.1
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1611.3 1003 78.4
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1608.6 1043 76.3
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1608.2 1007 77.4
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1607.4 1170 70.9
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1606.7 987 79.0
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1088 74.6
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1079 73.9
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1597.8 993 78.7
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1597.0 1090 74.6
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1596.6 1073 74.4
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1596.3 1088 73.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1044 76.2
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1584.7 1023 76.1
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1583.9 1090 73.8
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 988 77.6
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1581.6 1084 73.1
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1580.8 1086 72.3
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1580.5 1079 73.6
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1580.1 1085 73.1
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1576.2 988 76.7
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1576.2 1074 73.3
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1572.0 988 77.1
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1570.1 1070 73.0
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1569.7 1068 74.2
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1569.7 1073 72.6
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1567.7 997 76.6
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1567.0 1083 72.4
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1566.2 1105 72.4
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1565.4 1083 72.4
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1564.7 1083 72.3
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1555.8 1009 75.0
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1552.7 1062 72.2
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1550.4 1079 72.4
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1547.7 1088 70.9
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1546.2 1083 71.9
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1530.0 1034 72.9
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1520.4 1074 71.3
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1516.1 1083 71.0
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1513.0 1112 69.8
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1505.3 1179 65.3
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1504.2 1150 67.1
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1481.8 1061 69.9
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1460.3 969 73.5
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1453.7 1119 68.1
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1437.9 920 76.1
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1423.7 1081 68.5
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1415.2 875 78.7
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1399.0 1023 66.9
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1387.1 1004 69.4
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1361.7 1032 64.7
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1326.2 963 66.8
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1300.8 722 90.4
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1294.3 1108 63.1
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1293.5 1108 63.0
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1281.9 804 77.5
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1241.1 1005 62.3
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1162.5 1082 57.6
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1143.6 852 68.4
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1117.1 748 73.9
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1113.2 1037 54.1
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1100.1 751 75.1
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1098.2 1065 53.0
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1083.2 989 55.5
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.7e-287 993.0 739 66.8
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 5.4e-273 944.9 886 55.9
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.4e-258 894.8 774 57.6
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 2.4e-257 892.9 878 55.2
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 8.7e-255 884.4 585 73.5
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.6e-251 872.8 596 73.0
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 6.1e-240 835.1 973 44.7
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.9e-211 738.8 671 55.9
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 3.1e-196 689.9 642 56.9
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.8e-192 676.8 704 51.4
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.4e-182 642.9 368 82.6
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.9e-170 603.2 415 72.0
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.5e-169 600.5 532 60.0
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 3.3e-161 573.5 425 70.6
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 4.3e-161 573.2 498 63.9
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 4.6e-155 553.1 338 81.4
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 4.3e-153 546.6 1046 35.8
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.3e-146 525.0 393 63.6
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.6e-144 518.1 462 62.3
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 1.9e-132 478.0 397 61.5
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 6.1e-123 446.4 309 69.9
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.3e-120 438.7 324 66.0
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.1e-113 415.6 403 58.1
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 6.3e-104 383.3 1006 28.6
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 7.0e-103 379.8 953 28.9
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.2e-102 379.0 973 29.8
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.5e-100 371.3 227 79.3
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 7.0e-95 353.2 277 69.3
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.0e-90 337.4 915 29.7
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.2e-75 289.3 160 85.0
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.3e-56 226.1 222 53.2
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.7e-53 215.7 848 23.5
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 3.6e-51 208.0 335 34.6
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 6.8e-50 203.8 310 42.3
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.3e-43 183.0 220 51.4
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 2.8e-43 181.8 124 73.4
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 6.4e-40 170.6 149 57.7
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.2e-39 168.3 142 59.9
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 6.6e-37 160.6 154 55.8
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 4.3e-36 157.9 149 55.0
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 9.6e-36 156.8 279 36.6
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 7.6e-33 147.1 468 25.2
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 8.4e-32 143.7 125 60.8
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 7.1e-31 140.6 181 40.9
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 6.9e-26 124.0 111 55.9
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.9e-24 118.6 436 25.2
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-20 106.3 80 66.2
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 4.1e-18 98.2 151 49.0
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.2e-15 88.6 83 56.6
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 5.7e-12 77.8 54 63.0
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.2e-11 75.9 138 39.1
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.1e-10 73.6 51 66.7
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 6.5e-08 64.3 73 50.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.9e-07 62.8 45 64.4
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 4.2e-07 61.6 36 72.2
A02p03970 Brassica napus HOM05D018909 ORTHO05D016798 5.5e-07 61.2 52 71.2
A05p09840 Brassica napus HOM05D018909 ORTHO05D016798 5.5e-07 61.2 52 71.2
A03p60340 Brassica napus HOM05D037741 ORTHO05D016798 1.6e-06 59.7 52 71.2


User provided reference genes

Program Settings