Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1791.5 863 100.0
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1711.4 826 99.9
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1692.6 826 98.9
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1659.8 826 97.1
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1644.0 826 96.2
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1631.3 829 95.9
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1602.8 841 92.7
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1572.4 841 91.1
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1571.6 829 91.3
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1570.4 840 90.8
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1555.8 838 90.7
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1555.4 841 89.8
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1553.9 842 89.8
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1447.6 840 85.0
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1359.4 842 78.9
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1222.6 843 70.5
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1215.3 832 70.0
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1213.0 838 69.2
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1209.5 838 69.0
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1208.4 841 68.5
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1204.9 844 69.3
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1199.5 834 69.5
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1197.2 838 69.1
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1190.6 834 67.9
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1190.6 838 68.9
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1190.6 836 68.7
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1184.9 842 67.9
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1179.1 833 67.7
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1177.5 833 68.1
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1176.4 829 67.9
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1176.0 841 67.5
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1175.6 829 67.6
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1172.1 840 67.1
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1169.1 835 67.1
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1166.4 830 67.3
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1166.4 832 67.8
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1166.0 827 67.5
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1165.2 835 67.8
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1162.5 832 67.1
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1162.1 839 67.0
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1159.1 835 67.2
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1157.5 825 67.8
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1156.0 832 66.8
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1152.9 835 66.3
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1152.5 828 66.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1152.1 828 66.9
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1151.7 836 67.6
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1151.0 828 66.4
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1150.2 836 66.9
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1149.4 835 65.9
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1149.0 836 66.6
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1148.7 835 65.9
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1146.3 836 66.5
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1145.2 840 65.7
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1145.2 836 66.6
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1145.2 831 66.7
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1145.2 852 65.4
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 834 66.1
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1143.6 829 66.7
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1143.6 831 65.2
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1143.6 842 66.4
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1143.3 842 66.2
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1141.7 836 66.5
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1141.7 835 66.5
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1141.3 840 65.8
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1140.6 843 65.7
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1139.0 833 64.8
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1139.0 831 66.5
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1137.9 823 66.1
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1137.9 826 65.9
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1135.9 840 64.4
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1135.9 845 65.2
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1135.6 832 66.5
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1134.8 873 64.0
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1134.8 838 65.3
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1134.4 835 65.4
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1131.3 969 58.9
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1130.2 834 66.1
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1128.2 841 64.3
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1124.4 834 65.3
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1116.3 828 64.9
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1111.3 829 65.9
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1105.9 783 68.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1104.4 851 63.3
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1097.8 832 63.9
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.2e-311 1072.8 853 62.7
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 8.9e-311 1070.1 833 62.3
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 1.3e-306 1056.2 942 56.9
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 3.0e-306 1055.0 841 62.5
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 3.9e-306 1054.7 860 61.4
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 3.3e-305 1051.6 836 61.0
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 8.4e-301 1036.9 833 60.5
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 4.1e-295 1018.1 733 66.4
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 3.3e-289 998.4 759 63.4
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 2.8e-288 995.3 844 57.9
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 3.3e-281 971.8 829 57.3
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 8.0e-275 950.7 843 57.4
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 2.9e-269 932.2 668 67.5
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.0e-266 923.7 649 69.8
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 6.6e-253 877.9 835 54.3
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 3.3e-236 822.4 890 47.0
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.0e-235 817.8 568 68.0
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 3.7e-232 808.9 839 49.9
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 2.7e-230 802.7 857 47.6
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 1.0e-205 721.1 820 48.0
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 2.5e-175 620.2 366 84.2
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 3.9e-165 586.3 466 63.1
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.3e-157 560.5 398 66.3
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.1e-142 510.8 402 62.2
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.9e-123 447.2 362 59.9
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.3e-112 411.8 266 73.3
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 3.3e-111 407.1 556 46.2
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 5.2e-109 399.8 872 33.5
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 2.1e-94 351.3 740 34.6
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 1.8e-93 348.2 1131 26.3
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 2.1e-89 334.7 498 40.0
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.7e-89 334.3 228 70.2
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.6e-86 325.1 294 51.7
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 2.1e-86 324.7 567 40.0
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 2.1e-86 324.7 567 40.0
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.4e-84 317.4 269 59.1
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 4.5e-84 317.0 765 31.4
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 8.4e-83 312.8 301 58.5
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 6.0e-81 306.6 194 79.9
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 1.5e-79 302.0 195 73.8
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.5e-79 302.0 197 70.6
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 2.4e-77 294.7 204 69.1
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 3.2e-74 284.3 241 61.8
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.7e-43 182.2 152 59.9
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.5e-39 169.1 94 84.0
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 4.4e-39 167.5 107 74.8
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 7.7e-36 156.8 121 68.6
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.1e-33 148.7 78 88.5
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.2e-32 144.1 106 59.4
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 3.1e-29 134.8 72 84.7
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 1.3e-27 129.4 79 72.2
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.5e-27 127.1 70 82.9
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.1e-26 126.3 99 64.6
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.9e-26 125.6 69 85.5
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.7e-25 121.7 194 41.2
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.2e-23 116.3 104 63.5
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 3.7e-22 111.3 97 52.6
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 1.1e-21 109.8 193 38.9
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 2.4e-21 108.6 211 34.6
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 6.1e-17 94.0 56 66.1
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 9.8e-15 86.7 54 72.2
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.2e-14 85.5 65 61.5
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 2.3e-11 75.5 59 50.8
Eucgr.F02332 Eucalyptus grandis HOM05D002332 ORTHO05D002509 1.0e-08 66.6 330 25.2
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 3.1e-08 65.1 81 46.9
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 4.0e-08 64.7 331 20.2
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 4.0e-08 64.7 331 20.2
Cpa.g.sc65.26 Carica papaya HOM05D002332 ORTHO05D002509 4.4e-07 61.2 277 24.9
Ca_12501_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 4.4e-07 61.2 237 25.3
Ca_25727_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 4.4e-07 61.2 237 25.3
Ciclev10014731m.g Citrus clementina HOM05D001610 ORTHO05D001585 7.5e-07 60.5 141 28.4
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 1.3e-06 59.7 158 29.7
Carub.0005s1541 Capsella rubella HOM05D002332 ORTHO05D002509 2.2e-06 58.9 218 27.1
CDE06G2114 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 2.9e-06 58.5 350 20.3
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 2.9e-06 58.5 157 26.8
TWI36G1206 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 2.9e-06 58.5 240 25.4
BcaB01g00739 Brassica carinata HOM05D002332 ORTHO05D002509 3.7e-06 58.2 151 26.5
BcaC07g39390 Brassica carinata HOM05D002332 ORTHO05D002509 4.9e-06 57.8 151 27.2
C08p24150 Brassica napus HOM05D002332 ORTHO05D002509 4.9e-06 57.8 151 27.2
BolC8t50036H Brassica oleracea HOM05D002332 ORTHO05D002509 4.9e-06 57.8 151 27.2
ClCG06G017570 Citrullus lanatus HOM05D000464 ORTHO05D006292 6.4e-06 57.4 173 26.0
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 6.4e-06 57.4 31 87.1


User provided reference genes

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