Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35496H Brassica oleracea HOM05D025309 ORTHO05D023871 1.4e-95 352.8 170 100.0
C06p03550 Brassica napus HOM05D025309 ORTHO05D023871 1.4e-87 326.2 170 93.5
BcaC08g43094 Brassica carinata HOM05D025309 ORTHO05D023871 1.2e-33 147.1 76 93.4
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 2.8e-22 109.4 152 44.1
BraA06t23618Z Brassica rapa HOM05D000335 ORTHO05D001251 2.8e-22 109.4 152 44.1
BcaC08g43089 Brassica carinata HOM05D000335 ORTHO05D001251 3.6e-22 109.0 152 43.4
C06p03480 Brassica napus HOM05D000335 ORTHO05D001251 3.6e-22 109.0 152 43.4
BolC6t35488H Brassica oleracea HOM05D000335 ORTHO05D001251 6.2e-22 108.2 152 42.8
BcaB07g33708 Brassica carinata HOM05D000335 ORTHO05D001251 2.2e-19 99.8 160 39.4
Sp1g35820 Schrenkiella parvula HOM05D000335 ORTHO05D001251 1.1e-15 87.4 152 38.2
Thhalv10012211m.g Eutrema salsugineum HOM05D000335 ORTHO05D001251 1.9e-15 86.7 152 38.2
AT1G48910 Arabidopsis thaliana HOM05D000335 ORTHO05D001251 1.2e-12 77.4 152 37.5
C06p03610 Brassica napus HOM05D020121 ORTHO05D101991 3.4e-12 75.9 52 73.1
AL1G55732 Arabidopsis lyrata HOM05D000335 ORTHO05D001251 3.8e-11 72.4 149 38.3
Carub.0001s3805 Capsella rubella HOM05D000335 ORTHO05D001251 2.4e-10 69.7 152 35.5
CARHR038900 Cardamine hirsuta HOM05D000335 ORTHO05D001251 4.2e-10 68.9 93 43.0
A04p08560 Brassica napus HOM05D025309 ORTHO05D023871 2.7e-09 66.2 35 82.9
Aa31LG10G5010 Aethionema arabicum HOM05D000335 ORTHO05D001251 4.6e-09 65.5 101 37.6
BraA04t16550Z Brassica rapa HOM05D025309 ORTHO05D023871 1.0e-08 64.3 33 90.9
Glyma.06G152700 Glycine max HOM05D000335 ORTHO05D001251 1.0e-08 64.3 93 38.7
Aqoxy5G02247 Aquilegia oxysepala HOM05D000335 ORTHO05D001251 6.7e-08 61.6 161 26.7
Medtr4g051642 Medicago truncatula HOM05D000335 ORTHO05D001251 8.7e-08 61.2 157 28.7
FvH4_2g15120 Fragaria vesca HOM05D000335 ORTHO05D001251 1.1e-07 60.8 88 35.2
Glyma.04G213600 Glycine max HOM05D000335 ORTHO05D001251 1.1e-07 60.8 93 37.6
TPR.G26557 Trifolium pratense HOM05D000335 ORTHO05D001251 1.1e-07 60.8 93 38.7
Psat5g220680 Pisum sativum HOM05D000335 ORTHO05D001251 1.9e-07 60.1 168 28.6
Cfa018489 Carpinus fangiana HOM05D000335 ORTHO05D001251 3.3e-07 59.3 149 30.9
Haze_17594 Corylus avellana HOM05D000335 ORTHO05D001251 3.3e-07 59.3 149 30.2
Psat5g146760 Pisum sativum HOM05D000335 ORTHO05D001251 3.3e-07 59.3 108 34.3
Psat5g220720 Pisum sativum HOM05D000335 ORTHO05D001251 3.3e-07 59.3 93 38.7
THA.LOC104820418 Tarenaya hassleriana HOM05D000335 ORTHO05D001251 3.3e-07 59.3 90 41.1
AUR62035621 Chenopodium quinoa HOM05D000335 ORTHO05D001251 4.3e-07 58.9 90 40.0
MBI06_g06675_MAGBIO Magnolia biondii HOM05D000335 ORTHO05D001251 4.3e-07 58.9 149 32.2
Dinv32995 Davidia involucrata HOM05D000335 ORTHO05D001251 5.6e-07 58.5 101 33.7
Psat5g062240 Pisum sativum HOM05D000335 ORTHO05D001251 5.6e-07 58.5 93 37.6
Sc10g0002330 Simmondsia chinensis HOM05D000335 ORTHO05D001251 5.6e-07 58.5 90 42.2
MELO3C023246.2 Cucumis melo HOM05D000335 ORTHO05D001251 7.4e-07 58.2 90 36.7
Manes.07G022200 Manihot esculenta HOM05D000335 ORTHO05D001251 7.4e-07 58.2 145 31.7
RcHm_v2.0_Chr4g0422151 Rosa chinensis HOM05D000335 ORTHO05D001251 7.4e-07 58.2 101 35.6
Aqoxy2G03129 Aquilegia oxysepala HOM05D000335 ORTHO05D001251 9.6e-07 57.8 162 30.2
C06p03560 Brassica napus HOM05D000335 ORTHO05D021979 9.6e-07 57.8 46 60.9
Cfa002882 Carpinus fangiana HOM05D000335 ORTHO05D001251 9.6e-07 57.8 65 49.2
Sc11g0005030 Simmondsia chinensis HOM05D000335 ORTHO05D001251 9.6e-07 57.8 149 30.9
FAN15G2399 Fragaria x ananassa HOM05D000335 ORTHO05D001251 1.3e-06 57.4 93 33.3
FAN24G1123 Fragaria x ananassa HOM05D000335 ORTHO05D001251 1.3e-06 57.4 93 33.3
Manes.02G172900 Manihot esculenta HOM05D000335 ORTHO05D001251 1.3e-06 57.4 90 37.8
Psat5g220640 Pisum sativum HOM05D000335 ORTHO05D001251 1.3e-06 57.4 108 34.3
QL02p006313 Quercus lobata HOM05D000335 ORTHO05D001251 1.3e-06 57.4 146 30.8
TPR.G6042 Trifolium pratense HOM05D000335 ORTHO05D001251 1.3e-06 57.4 66 45.5
TAR365G0387 Trochodendron aralioides HOM05D000335 ORTHO05D001251 1.3e-06 57.4 93 35.5
CSS0017830 Camellia sinensis var. sinensis HOM05D000335 ORTHO05D001251 1.6e-06 57.0 160 27.5
Eucgr.L00638 Eucalyptus grandis HOM05D000335 ORTHO05D001251 1.6e-06 57.0 160 31.2
QL02p006336 Quercus lobata HOM05D000335 ORTHO05D001251 1.6e-06 57.0 146 30.1
TAR633G2744 Trochodendron aralioides HOM05D000335 ORTHO05D001251 1.6e-06 57.0 93 33.3
C06p03620 Brassica napus HOM05D000335 ORTHO05D021979 2.1e-06 56.6 46 60.9
Glyma.06G120700 Glycine max HOM05D000335 ORTHO05D001251 2.1e-06 56.6 166 28.9
Lj7A358G17 Lonicera japonica HOM05D000335 ORTHO05D001251 2.1e-06 56.6 156 28.8
Manes.17G109800 Manihot esculenta HOM05D000335 ORTHO05D001251 2.1e-06 56.6 101 32.7
Medtr3g088945 Medicago truncatula HOM05D000335 ORTHO05D001251 2.1e-06 56.6 174 26.4
THA.LOC104824743 Tarenaya hassleriana HOM05D000335 ORTHO05D001251 2.1e-06 56.6 106 34.0
Ah.16g103470 Amaranthus hybridus HOM05D000335 ORTHO05D001251 2.8e-06 56.2 160 28.8
arahy.Tifrunner.gnm1.ann1.JH3E8T Arachis hypogaea HOM05D000335 ORTHO05D001251 2.8e-06 56.2 156 30.8
BcaC08g43091 Brassica carinata HOM05D029870 ORTHO05D021946 2.8e-06 56.2 110 35.5
ClCG02G000550 Citrullus lanatus HOM05D000335 ORTHO05D001251 2.8e-06 56.2 101 31.7
MELO3C011703.2 Cucumis melo HOM05D000335 ORTHO05D001251 2.8e-06 56.2 93 36.6
Medtr3g088925 Medicago truncatula HOM05D000335 ORTHO05D001251 2.8e-06 56.2 174 27.0
Psat5g060200 Pisum sativum HOM05D000335 ORTHO05D001251 2.8e-06 56.2 93 36.6
Psat5g060240 Pisum sativum HOM05D000335 ORTHO05D001251 2.8e-06 56.2 93 37.6
arahy.Tifrunner.gnm1.ann1.K71B7K Arachis hypogaea HOM05D000335 ORTHO05D001251 3.7e-06 55.8 156 30.1
ClCG08G003300 Citrullus lanatus HOM05D000335 ORTHO05D001251 3.7e-06 55.8 101 33.7
Gohir.A11G056900 Gossypium hirsutum HOM05D000335 ORTHO05D001251 3.7e-06 55.8 157 27.4
Manes.18G085400 Manihot esculenta HOM05D000335 ORTHO05D001251 3.7e-06 55.8 93 33.3
Psat5g082680 Pisum sativum HOM05D000335 ORTHO05D001251 3.7e-06 55.8 101 32.7
TPR.G25620 Trifolium pratense HOM05D000335 ORTHO05D001251 3.7e-06 55.8 111 30.6
MSTRG.25342 Avicennia marina HOM05D000335 ORTHO05D001251 4.8e-06 55.5 105 32.4
Haze_25213 Corylus avellana HOM05D000335 ORTHO05D001251 4.8e-06 55.5 69 43.5
Gohir.A08G116100 Gossypium hirsutum HOM05D000335 ORTHO05D001251 4.8e-06 55.5 106 33.0
TWI60G0790 Tripterygium wilfordii HOM05D000335 ORTHO05D001251 4.8e-06 55.5 106 28.3
TAR625G0721 Trochodendron aralioides HOM05D000335 ORTHO05D001251 4.8e-06 55.5 93 34.4
Lj7A357G29 Lonicera japonica HOM05D000335 ORTHO05D021979 6.2e-06 55.1 74 37.8
Lj1g0027800 Lotus japonicus HOM05D000335 ORTHO05D001251 6.2e-06 55.1 101 32.7
MD15G1274600 Malus domestica HOM05D000335 ORTHO05D001251 6.2e-06 55.1 93 35.5
Oeu064159.1 Olea europaea HOM05D000335 ORTHO05D001251 6.2e-06 55.1 101 32.7
Oeu064163.1 Olea europaea HOM05D000335 ORTHO05D001251 6.2e-06 55.1 101 31.7
Prupe.6G157400 Prunus persica HOM05D000335 ORTHO05D001251 6.2e-06 55.1 71 39.4
CSS0008169 Camellia sinensis var. sinensis HOM05D000335 ORTHO05D001251 8.1e-06 54.7 104 33.7
Oeu064157.1 Olea europaea HOM05D000335 ORTHO05D001251 8.1e-06 54.7 101 31.7
Thecc.01G129900 Theobroma cacao HOM05D000335 ORTHO05D001251 8.1e-06 54.7 90 37.8


User provided reference genes

Program Settings