Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 8.5e-216 753.4 393 100.0
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.2e-192 675.6 400 90.0
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.8e-189 666.0 393 90.6
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 5.2e-189 664.5 393 90.3
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 9.5e-183 643.7 398 87.4
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 8.9e-181 637.1 396 85.9
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.0e-168 595.5 396 79.8
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 8.4e-155 550.8 396 75.5
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.1e-154 548.5 396 74.5
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.0e-152 543.9 397 74.1
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.3e-152 542.7 411 73.2
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.5e-151 539.3 394 74.9
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.1e-143 513.8 399 69.2
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.2e-138 495.4 393 67.7
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 5.4e-138 495.0 394 68.0
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.0e-136 490.7 406 67.2
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 6.7e-136 488.0 393 66.4
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.9e-135 486.5 391 66.5
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.4e-133 480.3 402 65.4
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 2.4e-133 479.6 393 65.9
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 9.9e-132 474.2 398 65.3
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 2.1e-129 466.5 378 66.1
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 2.1e-129 466.5 400 64.5
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 4.6e-129 465.3 388 64.7
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.8e-128 463.4 399 64.2
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 3.0e-128 462.6 400 64.5
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 7.4e-127 458.0 399 63.9
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.6e-126 456.8 410 62.9
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 3.1e-125 452.6 378 64.6
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 4.0e-125 452.2 378 64.6
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.2e-124 450.7 378 64.6
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.5e-124 450.3 398 62.8
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 3.0e-120 436.0 400 61.8
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 9.3e-114 414.5 400 57.5
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.3e-112 410.6 400 56.8
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 6.7e-112 408.3 400 56.5
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.7e-110 402.5 399 55.4
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 4.8e-110 402.1 401 56.4
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 4.8e-110 402.1 404 54.2
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 6.3e-110 401.7 401 55.4
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.2e-108 397.5 401 55.4
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.5e-108 397.1 399 54.9
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.2e-107 393.3 400 53.0
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 6.5e-107 391.7 400 53.0
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 6.5e-107 391.7 401 54.4
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 3.2e-106 389.4 398 53.8
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 6.1e-105 385.2 402 52.2
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 6.1e-105 385.2 402 52.0
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-104 384.0 399 53.1
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-103 380.6 398 52.8
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.2e-102 376.7 403 52.9
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.4e-101 374.0 325 63.7
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.4e-101 374.0 402 51.5
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 3.1e-101 372.9 402 49.3
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.2e-100 370.9 399 52.1
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.5e-100 370.5 402 51.7
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.3e-99 367.5 399 48.1
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 2.9e-99 366.3 404 50.2
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 5.0e-99 365.5 400 52.5
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 8.5e-99 364.8 400 50.5
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 8.5e-99 364.8 400 50.2
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.1e-98 364.4 400 49.2
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 1.9e-98 363.6 404 51.0
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 1.9e-98 363.6 403 49.9
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 3.2e-98 362.8 399 50.4
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 3.2e-98 362.8 400 49.8
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 4.2e-98 362.5 400 49.5
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.2e-97 360.9 400 49.5
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.6e-97 360.5 403 49.4
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 4.7e-97 359.0 401 49.6
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.8e-96 357.1 400 48.5
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 5.2e-96 355.5 402 48.8
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.5e-95 354.0 399 50.6
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 2.0e-95 353.6 407 48.2
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 2.6e-95 353.2 399 48.6
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.6e-95 353.2 399 50.1
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.6e-95 353.2 400 48.0
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 4.4e-95 352.4 399 50.4
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.4e-95 351.7 415 47.5
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 7.4e-95 351.7 400 47.5
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 2.2e-94 350.1 401 48.1
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 2.2e-94 350.1 401 48.1
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.2e-94 350.1 398 50.0
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 2.8e-94 349.7 399 49.9
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 6.3e-94 348.6 394 46.2
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 8.2e-94 348.2 399 48.9
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 1.4e-93 347.4 400 48.8
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 2.4e-93 346.7 398 48.0
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 5.3e-93 345.5 400 47.8
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 5.3e-93 345.5 400 48.5
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 1.0e-91 341.3 394 47.2
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.3e-91 340.9 402 49.5
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.3e-91 340.9 402 48.3
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.7e-91 340.5 483 44.1
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 5.0e-91 339.0 402 47.8
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 5.0e-91 339.0 401 47.4
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 8.5e-91 338.2 421 45.8
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.5e-90 337.4 400 47.0
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.9e-90 337.0 401 47.1
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.2e-90 336.3 395 49.1
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 1.0e-88 331.3 398 47.5
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 1.0e-88 331.3 399 48.6
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.8e-88 330.5 504 41.5
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 3.0e-88 329.7 396 45.5
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 5.7e-87 325.5 356 53.1
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 7.5e-87 325.1 404 46.3
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 6.3e-86 322.0 369 48.5
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 2.4e-85 320.1 403 43.7
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.4e-85 320.1 397 44.3
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 2.4e-85 320.1 344 50.9
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.0e-83 314.7 401 44.9
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 2.2e-83 313.5 408 44.1
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 5.5e-82 308.9 350 51.1
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 9.4e-82 308.1 405 43.5
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 2.3e-80 303.5 427 41.2
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 8.8e-80 301.6 387 45.2
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 3.4e-79 299.7 393 46.6
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 7.5e-79 298.5 327 52.0
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 2.2e-78 297.0 318 51.3
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 4.8e-78 295.8 557 39.5
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.8e-77 293.9 350 49.7
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 3.1e-77 293.1 392 41.6
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.7e-76 288.5 352 46.6
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.7e-75 287.3 406 41.9
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 7.2e-74 282.0 404 40.1
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.1e-73 280.4 343 45.8
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.4e-72 277.7 404 41.3
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 4.0e-72 276.2 346 46.2
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 7.5e-71 271.9 393 42.5
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 9.5e-66 255.0 472 35.0
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.7e-59 234.2 241 54.4
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.9e-58 230.7 243 55.1
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 1.2e-57 228.0 243 52.7
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 5.2e-56 222.6 262 46.6
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 3.4e-55 219.9 241 49.4
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.4e-53 213.8 343 37.3
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.2e-53 213.4 166 68.7
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.2e-52 211.5 170 65.9
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.5e-52 209.9 202 55.0
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.5e-52 209.9 166 68.1
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 6.0e-52 209.1 166 68.1
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.0e-51 208.4 202 54.5
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 3.0e-51 206.8 351 35.9
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 3.9e-51 206.5 409 33.3
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-50 204.9 174 64.4
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 3.3e-50 203.4 204 52.5
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.5e-50 201.8 163 65.0
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 6.2e-49 199.1 162 62.3
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 3.1e-48 196.8 372 34.1
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.0e-48 196.4 335 39.4
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 6.4e-46 189.1 166 63.9
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.7e-41 172.9 407 31.4
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 8.1e-41 172.2 400 30.0
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.0e-39 167.5 406 30.3
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.6e-39 167.2 317 37.9
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 4.4e-39 166.4 189 48.7
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.9e-38 163.7 414 30.2
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.1e-37 161.8 406 28.8
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.1e-37 159.8 259 44.8
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 1.1e-34 151.8 201 38.3
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.5e-34 150.6 126 63.5
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 8.1e-33 145.6 290 32.4
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 7.6e-31 139.0 156 45.5
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.3e-30 138.3 159 46.5
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.4e-30 135.6 104 69.2
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 1.1e-29 135.2 123 55.3
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.1e-29 135.2 156 44.2
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 4.6e-28 129.8 403 26.1
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.1e-26 125.2 134 47.8
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.3e-26 123.2 187 44.4
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 9.0e-24 115.5 172 36.0
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 3.4e-23 113.6 130 43.8
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 2.7e-20 104.0 137 43.1
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 3.5e-20 103.6 137 42.3
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.7e-14 84.7 284 26.8
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 3.4e-07 60.5 337 23.7


User provided reference genes

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