Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p03150 Brassica napus HOM05D010442 ORTHO05D010690 0.0e+00 1268.1 650 100.0
BolC6t35433H Brassica oleracea HOM05D010442 ORTHO05D010690 0.0e+00 1268.1 650 100.0
BcaC08g43056 Brassica carinata HOM05D010442 ORTHO05D010690 0.0e+00 1211.1 650 96.3
BraA06t23642Z Brassica rapa HOM05D010442 ORTHO05D010690 3.7e-309 1064.3 662 86.3
A06p04380 Brassica napus HOM05D010442 ORTHO05D010690 1.8e-300 1035.4 656 84.9
BcaB07g33745 Brassica carinata HOM05D010442 ORTHO05D010690 6.9e-263 910.6 703 71.4
Sp1g35500 Schrenkiella parvula HOM05D010442 ORTHO05D010690 1.9e-241 839.3 663 69.4
Thhalv10011299m.g Eutrema salsugineum HOM05D010442 ORTHO05D010690 2.0e-230 802.7 673 66.4
AL1G55200 Arabidopsis lyrata HOM05D010442 ORTHO05D010690 1.0e-221 773.9 662 65.0
AT1G48560 Arabidopsis thaliana HOM05D010442 ORTHO05D010690 9.4e-220 767.3 661 64.8
Carub.0001s3767 Capsella rubella HOM05D010442 ORTHO05D010690 3.1e-215 752.3 661 63.7
Aa31LG10G5240 Aethionema arabicum HOM05D010442 ORTHO05D010690 1.4e-146 524.2 664 48.8
BcaB07g33758 Brassica carinata HOM05D010442 ORTHO05D010690 3.4e-121 439.9 281 79.0
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 5.5e-103 379.4 285 70.9
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 1.7e-96 357.8 277 69.7
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 1.5e-71 275.0 277 59.6
THA.LOC104809844 Tarenaya hassleriana HOM05D010442 ORTHO05D010690 9.8e-68 262.3 652 33.6
CARHR284500 Cardamine hirsuta HOM05D010442 ORTHO05D010690 7.8e-49 199.5 239 54.4
BraA06t23650Z Brassica rapa HOM05D010442 ORTHO05D010690 9.3e-26 122.9 60 90.0
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 3.2e-18 97.8 90 61.1
Ciclev10002267m.g Citrus clementina HOM05D009639 ORTHO05D010690 2.6e-12 78.2 127 40.9
CANSAT56G3803 Cannabis sativa HOM05D009639 ORTHO05D010690 1.3e-11 75.9 129 41.1
Glyma.04G124900 Glycine max HOM05D009639 ORTHO05D010690 1.3e-11 75.9 172 34.3
CiPaw.13G018700 Carya illinoinensis HOM05D009639 ORTHO05D010690 1.7e-11 75.5 124 38.7
TAR623G0143 Trochodendron aralioides HOM05D009639 ORTHO05D010690 2.9e-11 74.7 132 41.7
Phvul.005G012500 Phaseolus vulgaris HOM05D009639 ORTHO05D010690 3.8e-11 74.3 197 33.0
Potri.003G188600 Populus trichocarpa HOM05D009639 ORTHO05D010690 6.5e-11 73.6 202 32.7
Psat5g223640 Pisum sativum HOM05D009639 ORTHO05D010690 1.4e-10 72.4 123 39.8
Lalb_Chr18g0048201 Lupinus albus HOM05D009639 ORTHO05D010690 2.5e-10 71.6 126 38.1
Cfa010987 Carpinus fangiana HOM05D009639 ORTHO05D010690 5.5e-10 70.5 132 36.4
Sabra03G0137900 Salix brachista HOM05D009639 ORTHO05D010690 1.6e-09 68.9 192 33.3
Haze_02948 Corylus avellana HOM05D009639 ORTHO05D010690 2.1e-09 68.6 121 34.7
BraA06t23651Z Brassica rapa HOM05D010442 ORTHO05D010690 6.1e-09 67.0 47 74.5
Glyma.06G313400 Glycine max HOM05D009639 ORTHO05D010690 7.9e-09 66.6 172 34.9
TPR.G24389 Trifolium pratense HOM05D009639 ORTHO05D010690 7.9e-09 66.6 123 35.0
Aqoxy1G01630 Aquilegia oxysepala HOM05D028564 ORTHO05D010690 1.3e-08 65.9 130 37.7
Psat4g150240 Pisum sativum HOM05D009639 ORTHO05D010690 3.9e-08 64.3 124 38.7
Nn7g37150 Nelumbo nucifera HOM05D009639 ORTHO05D010690 5.1e-08 63.9 295 28.1
Medtr3g010860 Medicago truncatula HOM05D009639 ORTHO05D010690 5.7e-07 60.5 185 31.4
QL04p023061 Quercus lobata HOM05D009639 ORTHO05D010690 5.7e-07 60.5 161 32.3
Aqoxy5G04141 Aquilegia oxysepala HOM05D009639 ORTHO05D010690 9.7e-07 59.7 116 37.9
Atru.chr12.1203 Acer truncatum HOM05D009639 ORTHO05D006184 1.6e-06 58.9 260 28.1
Lj3g0012055 Lotus japonicus HOM05D009639 ORTHO05D010690 8.2e-06 56.6 191 33.0


User provided reference genes

Program Settings