Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35406H Brassica oleracea HOM05D006118 ORTHO05D007750 2.2e-221 771.9 382 100.0
BcaC08g43024 Brassica carinata HOM05D006118 ORTHO05D007750 2.0e-185 652.5 329 98.5
C06p02770 Brassica napus HOM05D006118 ORTHO05D007750 2.0e-185 652.5 329 98.5
BcaB07g33772 Brassica carinata HOM05D006118 ORTHO05D007750 9.8e-185 650.2 329 97.9
A06p04570 Brassica napus HOM05D006118 ORTHO05D007750 7.0e-183 644.0 330 97.0
BraA06t23661Z Brassica rapa HOM05D006118 ORTHO05D007750 7.0e-183 644.0 330 97.0
AT1G48270 Arabidopsis thaliana HOM05D006118 ORTHO05D007750 1.6e-182 642.9 328 96.3
Carub.0001s3740 Capsella rubella HOM05D006118 ORTHO05D007750 7.8e-182 640.6 328 96.0
AL1G54870 Arabidopsis lyrata HOM05D006118 ORTHO05D007750 1.0e-181 640.2 328 96.0
Thhalv10011644m.g Eutrema salsugineum HOM05D006118 ORTHO05D007750 2.3e-181 639.0 329 95.7
Sp1g35230 Schrenkiella parvula HOM05D006118 ORTHO05D007750 2.3e-181 639.0 329 96.0
CARHR037890 Cardamine hirsuta HOM05D006118 ORTHO05D007750 2.5e-180 635.6 328 94.5
THA.LOC104824720 Tarenaya hassleriana HOM05D006118 ORTHO05D007750 4.5e-153 545.0 324 83.6
Cpa.g.sc146.16 Carica papaya HOM05D006118 ORTHO05D007750 1.0e-149 533.9 321 81.6
Ciclev10005468m.g Citrus clementina HOM05D006118 ORTHO05D007750 3.0e-149 532.3 326 80.7
Atru.chr4.3167 Acer truncatum HOM05D006118 ORTHO05D007750 1.4e-146 523.5 318 81.4
PSO063G1448 Papaver somniferum HOM05D006118 ORTHO05D007750 1.4e-146 523.5 319 79.3
Thecc.04G313700 Theobroma cacao HOM05D006118 ORTHO05D007750 4.0e-146 521.9 318 79.9
Gorai.005G073100 Gossypium raimondii HOM05D006118 ORTHO05D007750 1.5e-145 520.0 318 79.6
Aa31LG10G5490 Aethionema arabicum HOM05D006118 ORTHO05D007750 2.6e-145 519.2 327 81.0
Gohir.A02G058900 Gossypium hirsutum HOM05D006118 ORTHO05D007750 3.4e-145 518.8 318 79.6
Gohir.D02G064600 Gossypium hirsutum HOM05D006118 ORTHO05D007750 1.3e-144 516.9 318 79.2
PSO421G0086 Papaver somniferum HOM05D006118 ORTHO05D007750 1.3e-144 516.9 319 78.7
CiPaw.16G067300 Carya illinoinensis HOM05D006118 ORTHO05D007750 1.7e-144 516.5 320 79.1
FvH4_2g30820 Fragaria vesca HOM05D006118 ORTHO05D007750 2.2e-144 516.2 328 76.8
FAN20G1786 Fragaria x ananassa HOM05D006118 ORTHO05D007750 2.2e-144 516.2 328 76.8
RcHm_v2.0_Chr6g0312021 Rosa chinensis HOM05D006118 ORTHO05D007750 2.9e-144 515.8 328 76.5
FAN15G2451 Fragaria x ananassa HOM05D006118 ORTHO05D007750 2.5e-143 512.7 328 76.2
MD08G1073200 Malus domestica HOM05D006118 ORTHO05D007750 3.2e-143 512.3 328 75.6
Prupe.1G402500 Prunus persica HOM05D006118 ORTHO05D007750 5.5e-143 511.5 328 76.2
FAN27G1493 Fragaria x ananassa HOM05D006118 ORTHO05D007750 7.1e-143 511.1 328 76.2
Phvul.001G044800 Phaseolus vulgaris HOM05D006118 ORTHO05D007750 7.1e-143 511.1 326 77.3
arahy.Tifrunner.gnm1.ann1.ZI0SGT Arachis hypogaea HOM05D006118 ORTHO05D007750 2.1e-142 509.6 326 76.7
CANSAT25G1353 Cannabis sativa HOM05D006118 ORTHO05D007750 2.7e-142 509.2 322 78.0
MD15G1048100 Malus domestica HOM05D006118 ORTHO05D007750 1.3e-141 506.9 320 76.9
Ca_13095_v3 Cicer arietinum L. HOM05D006118 ORTHO05D007750 1.8e-141 506.5 328 75.9
Migut.E01785 Erythranthe guttata HOM05D006118 ORTHO05D007750 3.0e-141 505.8 331 76.1
TAR624G0180 Trochodendron aralioides HOM05D006118 ORTHO05D007750 6.7e-141 504.6 326 77.3
Duzib151G0955 Durio zibethinus HOM05D006118 ORTHO05D007750 1.5e-140 503.4 290 82.1
Glyma.17G219300 Glycine max HOM05D006118 ORTHO05D007750 2.5e-140 502.7 326 75.8
Lj5g0024511 Lotus japonicus HOM05D006118 ORTHO05D007750 2.5e-140 502.7 328 75.3
arahy.Tifrunner.gnm1.ann1.Z643MN Arachis hypogaea HOM05D006118 ORTHO05D007750 5.7e-140 501.5 336 74.7
GSVIVG01035487001 Vitis vinifera HOM05D006118 ORTHO05D007750 7.4e-140 501.1 323 76.8
MELO3C016921.2 Cucumis melo HOM05D006118 ORTHO05D007750 3.7e-139 498.8 326 74.8
Cc08_g01010 Coffea canephora HOM05D006118 ORTHO05D007750 6.2e-139 498.0 336 74.4
CsaV3_4G036130 Cucumis sativus L. HOM05D006118 ORTHO05D007750 6.2e-139 498.0 326 74.8
ClCG05G015850 Citrullus lanatus HOM05D006118 ORTHO05D007750 1.2e-137 493.8 328 73.5
Eucgr.C00739 Eucalyptus grandis HOM05D006118 ORTHO05D007750 1.2e-137 493.8 330 75.2
HanXRQChr09g0261891 Helianthus annuus HOM05D006118 ORTHO05D007750 1.0e-136 490.7 332 72.6
Hma1.2p1_0641F.1_g194200 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 2.9e-136 489.2 309 78.3
Solyc08g061260.4 Solanum lycopersicum HOM05D006118 ORTHO05D007750 6.5e-136 488.0 335 74.0
Sopen08g016640 Solanum pennellii HOM05D006118 ORTHO05D007750 1.4e-135 486.9 331 74.3
PGSC0003DMG402012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 2.5e-135 486.1 331 74.0
MSTRG.14088 Avicennia marina HOM05D006118 ORTHO05D007750 7.1e-135 484.6 323 74.9
Sed0026686 Sechium edule HOM05D006118 ORTHO05D007750 1.2e-134 483.8 325 72.0
SGA_v2.0_scaffold163G37995 Striga asiatica HOM05D006118 ORTHO05D007750 2.1e-134 483.0 337 73.0
Lalb_Chr24g0393681 Lupinus albus HOM05D006118 ORTHO05D007750 4.6e-134 481.9 316 75.6
Sabra08G0153100 Salix brachista HOM05D006118 ORTHO05D007750 6.1e-134 481.5 329 75.1
Manes.03G212200 Manihot esculenta HOM05D006118 ORTHO05D007750 1.8e-133 479.9 328 74.1
Aqoxy7G01030 Aquilegia oxysepala HOM05D006118 ORTHO05D007750 3.0e-133 479.2 328 73.2
Lsat_1_v5_gn_8_70541 Lactuca sativa HOM05D006118 ORTHO05D007750 5.1e-133 478.4 332 71.7
VMungo0647G1968 Vigna mungo HOM05D006118 ORTHO05D007750 9.7e-132 474.2 284 80.3
DCAR_003726 Daucus carota HOM05D006118 ORTHO05D007750 2.8e-131 472.6 341 69.5
Glyma.14G107200 Glycine max HOM05D006118 ORTHO05D007750 8.2e-131 471.1 284 79.2
PGR142G4277 Punica granatum HOM05D006118 ORTHO05D007750 3.1e-130 469.2 321 73.8
Rhsim13G0216900 Rhododendron simsii HOM05D006118 ORTHO05D007750 5.9e-129 464.9 332 71.1
CSS0045297 Camellia sinensis var. sinensis HOM05D006118 ORTHO05D007750 2.2e-128 463.0 288 78.1
Medtr1g015010 Medicago truncatula HOM05D006118 ORTHO05D007750 1.1e-124 450.7 328 70.1
Sc06g0000090 Simmondsia chinensis HOM05D006118 ORTHO05D007750 4.8e-123 445.3 319 69.6
SalBow1G5335 Salvia bowleyana HOM05D006118 ORTHO05D007750 9.1e-122 441.0 434 57.4
TWI53G1421 Tripterygium wilfordii HOM05D006118 ORTHO05D007750 2.9e-120 436.0 321 70.7
Psat6g023080 Pisum sativum HOM05D006118 ORTHO05D007750 1.9e-119 433.3 285 76.1
Nitab4.5_0001576g0100 Nicotiana tabacum HOM05D006118 ORTHO05D007750 2.5e-119 433.0 317 70.7
vmacro04115 Vaccinium macrocarpon HOM05D006118 ORTHO05D007750 3.2e-119 432.6 396 58.6
Actinidia01325 Actinidia chinensis HOM05D006118 ORTHO05D007750 2.0e-116 423.3 271 76.8
CDE06G0461 Ceratophyllum demersum HOM05D006118 ORTHO05D007750 3.3e-116 422.5 312 67.3
Os06g0199800 Oryza sativa ssp. japonica HOM05D006118 ORTHO05D007750 4.4e-116 422.2 320 64.7
COL.COLO4_34509 Corchorus olitorius HOM05D006118 ORTHO05D007750 1.4e-114 417.2 341 63.9
FAN24G3410 Fragaria x ananassa HOM05D006118 ORTHO05D007750 1.8e-114 416.8 262 75.2
Dinv41849 Davidia involucrata HOM05D006118 ORTHO05D007750 3.1e-114 416.0 269 75.1
ECA236G0212 Erigeron canadensis HOM05D006118 ORTHO05D007750 1.2e-113 414.1 271 74.5
TPR.G38901 Trifolium pratense HOM05D006118 ORTHO05D007750 2.2e-112 409.8 261 76.2
Oeu036787.2 Olea europaea HOM05D006118 ORTHO05D007750 5.5e-111 405.2 303 68.0
Hma1.2p1_0641F.1_g194210 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 2.1e-110 403.3 261 75.5
AagrBONN_evm.TU.Sc2ySwM_228.1339 Anthoceros agrestis HOM05D006118 ORTHO05D007750 3.0e-109 399.4 317 62.5
Potri.008G206000 Populus trichocarpa HOM05D006118 ORTHO05D007750 3.9e-109 399.1 292 69.2
AUR62020280 Chenopodium quinoa HOM05D006118 ORTHO05D007750 2.9e-104 382.9 306 67.6
Peaxi162Scf00486g00116 Petunia axillaris HOM05D006118 ORTHO05D007750 8.5e-104 381.3 328 62.2
Ah.12g061330 Amaranthus hybridus HOM05D006118 ORTHO05D007750 7.2e-103 378.3 319 62.1
Mapoly0073s0070 Marchantia polymorpha HOM05D006118 ORTHO05D007750 9.4e-103 377.9 288 62.2
Oeu024208.1 Olea europaea HOM05D006118 ORTHO05D007750 1.2e-100 370.9 249 73.1
Pp3c15_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 6.3e-99 365.2 317 56.2
Pp3c9_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 8.3e-99 364.8 289 60.2
EL10Ac2g02406 Beta vulgaris HOM05D006118 ORTHO05D007750 2.0e-97 360.1 320 60.3
Hund25545 Selenicereus undatus HOM05D006118 ORTHO05D007750 3.5e-97 359.4 286 66.1
SMO119G0499 Selaginella moellendorffii HOM05D006118 ORTHO05D007750 2.1e-94 350.1 261 64.8
Haze_18321 Corylus avellana HOM05D006118 ORTHO05D007750 1.8e-93 347.1 650 37.7
BcaB01g03835 Brassica carinata HOM05D006118 ORTHO05D007750 6.3e-91 338.6 193 86.5
AUR62037725 Chenopodium quinoa HOM05D006118 ORTHO05D007750 4.0e-85 319.3 319 56.4
ATR0598G044 Amborella trichopoda HOM05D006118 ORTHO05D007750 1.2e-84 317.8 206 74.8
HPP92_016236 Vanilla planifolia HOM05D006118 ORTHO05D007750 1.2e-81 307.8 296 55.1
BcaB08g36375 Brassica carinata HOM05D006118 ORTHO05D007750 1.7e-80 303.9 193 80.8
Lj7A209G43 Lonicera japonica HOM05D006118 ORTHO05D007750 4.4e-76 289.3 240 64.6
arahy.Tifrunner.gnm1.ann1.C1NZN8 Arachis hypogaea HOM05D006118 ORTHO05D007750 9.2e-74 281.6 334 51.5
Zm00001eb278600 Zea mays HOM05D006118 ORTHO05D007750 3.5e-73 279.6 199 65.3
CBR_g36835 Chara braunii HOM05D006118 ORTHO05D007750 4.7e-70 269.2 225 58.2
PGSC0003DMG401012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 1.1e-66 258.1 164 77.4
BcaB01g01553 Brassica carinata HOM05D006118 ORTHO05D007750 1.9e-66 257.3 145 85.5
BcaB07g32513 Brassica carinata HOM05D006118 ORTHO05D007750 1.2e-65 254.6 178 69.1
MD15G1048300 Malus domestica HOM05D006118 ORTHO05D007750 3.3e-63 246.5 245 56.3
Nitab4.5_0009849g0030 Nicotiana tabacum HOM05D006118 ORTHO05D007750 4.1e-58 229.6 328 45.7
unitig_8.g4842 Utricularia gibba HOM05D006118 ORTHO05D007750 5.4e-58 229.2 163 68.1
arahy.Tifrunner.gnm1.ann1.K6H74S Arachis hypogaea HOM05D006118 ORTHO05D007750 6.6e-56 222.2 169 65.7
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 1.9e-42 177.6 131 67.9
Lalb_Chr23g0268011 Lupinus albus HOM05D006118 ORTHO05D007750 2.3e-40 170.6 101 78.2
Lj7A209G42 Lonicera japonica HOM05D006118 ORTHO05D007750 9.0e-37 158.7 90 81.1
PRCOL_00004868 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 5.5e-34 149.4 272 36.8
PRCOL_00005697 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 1.5e-31 141.4 272 31.2
ATR0684G160 Amborella trichopoda HOM05D006118 ORTHO05D007750 4.0e-29 133.3 92 67.4
SEGI_23264 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 3.5e-25 120.2 80 71.2
MCO03G156 Micromonas commoda HOM05D006118 ORTHO05D007750 5.9e-20 102.8 357 25.5
BcaB01g01552 Brassica carinata HOM05D006118 ORTHO05D007750 1.3e-16 91.7 53 90.6
Lalb_Chr23g0268021 Lupinus albus HOM05D006118 ORTHO05D007750 2.1e-09 67.8 157 32.5
SEGI_18851 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 1.5e-07 61.6 78 43.6
BolC6t35198H Brassica oleracea HOM05D006118 ORTHO05D007750 3.3e-07 60.5 47 74.5


User provided reference genes

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