Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35352H Brassica oleracea HOM05D000101 ORTHO05D042260 8.7e-54 213.4 108 100.0
C06p02250 Brassica napus HOM05D000101 ORTHO05D042260 4.3e-37 157.9 80 97.5
A10p06140 Brassica napus HOM05D000101 ORTHO05D000089 1.5e-18 96.3 89 59.6
BolC6t35351H Brassica oleracea HOM05D000101 ORTHO05D000089 1.6e-15 86.3 66 71.2
CARHR012520 Cardamine hirsuta HOM05D000101 ORTHO05D000089 3.0e-14 82.0 67 61.2
AT1G12280 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 6.7e-14 80.9 58 69.0
AT1G12220 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 5.7e-13 77.8 67 61.2
BcaC05g25204 Brassica carinata HOM05D000101 ORTHO05D000089 9.7e-13 77.0 58 67.2
BolC5t29835H Brassica oleracea HOM05D000101 ORTHO05D000089 9.7e-13 77.0 58 67.2
A06p09290 Brassica napus HOM05D000101 ORTHO05D000089 1.7e-12 76.3 67 59.7
AL1G23480 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 2.8e-12 75.5 66 57.6
AL1G23590 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 2.8e-12 75.5 57 64.9
CARHR012590 Cardamine hirsuta HOM05D000101 ORTHO05D000089 6.3e-12 74.3 58 67.2
BcaC07g42581 Brassica carinata HOM05D000101 ORTHO05D000089 8.2e-12 73.9 75 57.3
BcaC07g41710 Brassica carinata HOM05D000101 ORTHO05D000089 1.1e-11 73.6 77 51.9
C08p46750 Brassica napus HOM05D000101 ORTHO05D000089 1.1e-11 73.6 77 53.2
BcaB07g31810 Brassica carinata HOM05D000101 ORTHO05D000089 1.4e-11 73.2 67 58.2
Aa31LG1G3730 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.8e-11 72.8 66 59.1
BolC8t52215H Brassica oleracea HOM05D000101 ORTHO05D000089 1.8e-11 72.8 75 54.7
CARHR013070 Cardamine hirsuta HOM05D000101 ORTHO05D000089 1.8e-11 72.8 58 62.1
C08p46760 Brassica napus HOM05D000101 ORTHO05D000089 2.4e-11 72.4 75 54.7
BolC8t52214H Brassica oleracea HOM05D000101 ORTHO05D000089 5.3e-11 71.2 66 60.6
BraA09t41678Z Brassica rapa HOM05D000101 ORTHO05D000089 5.3e-11 71.2 66 60.6
Aa31LG1G3680 Aethionema arabicum HOM05D000101 ORTHO05D000089 7.0e-11 70.9 68 57.4
AT1G12210 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 7.0e-11 70.9 75 49.3
BcaC07g42587 Brassica carinata HOM05D000101 ORTHO05D000089 7.0e-11 70.9 75 52.0
CARHR220850 Cardamine hirsuta HOM05D000101 ORTHO05D000089 7.0e-11 70.9 58 63.8
Aa31LG1G3690 Aethionema arabicum HOM05D000101 ORTHO05D000089 9.1e-11 70.5 68 55.9
C08p47460 Brassica napus HOM05D000101 ORTHO05D000089 9.1e-11 70.5 75 54.7
Aa31LG1G2390 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.6e-10 69.7 58 62.1
A09p43210 Brassica napus HOM05D000101 ORTHO05D000089 1.6e-10 69.7 70 54.3
BcaB01g00640 Brassica carinata HOM05D000101 ORTHO05D000089 2.6e-10 68.9 70 52.9
AL7G41510 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 5.9e-10 67.8 58 63.8
Aa31LG1G2330 Aethionema arabicum HOM05D000101 ORTHO05D000089 7.7e-10 67.4 66 53.0
BcaB01g00645 Brassica carinata HOM05D000101 ORTHO05D000089 7.7e-10 67.4 70 51.4
BcaC07g39476 Brassica carinata HOM05D000101 ORTHO05D000089 7.7e-10 67.4 70 51.4
C08p25200 Brassica napus HOM05D000101 ORTHO05D000089 7.7e-10 67.4 70 51.4
BolC8t50140H Brassica oleracea HOM05D000101 ORTHO05D000089 7.7e-10 67.4 70 51.4
BraA09t39791Z Brassica rapa HOM05D000101 ORTHO05D000089 7.7e-10 67.4 70 51.4
Aa31LG2G12240 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.7e-09 66.2 67 52.2
Aa31LG4G13230 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.7e-09 66.2 58 58.6
Aa31LG4G13240 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.7e-09 66.2 58 58.6
A09p63930 Brassica napus HOM05D000101 ORTHO05D000089 1.7e-09 66.2 67 50.7
BraA09t41740Z Brassica rapa HOM05D000101 ORTHO05D000089 2.2e-09 65.9 76 50.0
A08p32950 Brassica napus HOM05D000101 ORTHO05D000089 2.9e-09 65.5 58 56.9
BraA08t35215Z Brassica rapa HOM05D000101 ORTHO05D000089 2.9e-09 65.5 58 56.9
BolC9t54462H Brassica oleracea HOM05D000101 ORTHO05D000089 3.8e-09 65.1 89 43.8
Aa31LG1G3670 Aethionema arabicum HOM05D000101 ORTHO05D000089 5.0e-09 64.7 70 51.4
Aa31LG8G10400 Aethionema arabicum HOM05D000101 ORTHO05D000089 8.5e-09 63.9 69 44.9
Aa31LG1G3700 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.1e-08 63.5 62 53.2
Aa31LG1G2880 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.5e-08 63.2 58 53.4
Aa31LG1G3570 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.5e-08 63.2 62 58.1
BraA09t41679Z Brassica rapa HOM05D000101 ORTHO05D000089 1.5e-08 63.2 69 50.7
BcaC04g22761 Brassica carinata HOM05D000101 ORTHO05D011607 1.9e-08 62.8 75 48.0
BolC8t52287H Brassica oleracea HOM05D000101 ORTHO05D000089 1.9e-08 62.8 78 50.0
Carub.0001s1196 Capsella rubella HOM05D000101 ORTHO05D000089 1.9e-08 62.8 68 55.9
Aa31LG1G2460 Aethionema arabicum HOM05D000101 ORTHO05D000089 2.5e-08 62.4 66 53.0
BcaB03g13202 Brassica carinata HOM05D000101 ORTHO05D000089 2.5e-08 62.4 58 55.2
BcaC07g42571 Brassica carinata HOM05D000101 ORTHO05D000089 2.5e-08 62.4 67 52.2
Aa31LG1G3560 Aethionema arabicum HOM05D000101 ORTHO05D000089 3.2e-08 62.0 70 48.6
BcaC07g41707 Brassica carinata HOM05D000101 ORTHO05D000089 3.2e-08 62.0 76 51.3
BolC8t52286H Brassica oleracea HOM05D000101 ORTHO05D000089 3.2e-08 62.0 76 51.3
A09p43140 Brassica napus HOM05D000101 ORTHO05D000089 4.2e-08 61.6 70 48.6
Aa31LG1G2920 Aethionema arabicum HOM05D000101 ORTHO05D000089 5.5e-08 61.2 58 48.3
Aa31LG1G2290 Aethionema arabicum HOM05D000101 ORTHO05D000089 7.2e-08 60.8 67 52.2
BcaB02g09946 Brassica carinata HOM05D000101 ORTHO05D000089 1.2e-07 60.1 82 42.7
Carub.0002s0397 Capsella rubella HOM05D000101 ORTHO05D000089 1.2e-07 60.1 76 48.7
Thhalv10023263m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 1.2e-07 60.1 68 50.0
A09p63950 Brassica napus HOM05D000101 ORTHO05D000089 1.6e-07 59.7 67 49.3
BraA09t41741Z Brassica rapa HOM05D000101 ORTHO05D000089 1.6e-07 59.7 67 49.3
BcaC07g41711 Brassica carinata HOM05D000101 ORTHO05D000089 2.1e-07 59.3 67 49.3
C08p47470 Brassica napus HOM05D000101 ORTHO05D000089 2.1e-07 59.3 67 49.3
BolC8t52288H Brassica oleracea HOM05D000101 ORTHO05D000089 2.1e-07 59.3 67 49.3
Aa31LG1G2340 Aethionema arabicum HOM05D000101 ORTHO05D000089 2.7e-07 58.9 66 47.0
Aa31LG1G2360 Aethionema arabicum HOM05D000101 ORTHO05D000089 2.7e-07 58.9 66 50.0
Aa31LG1G2900 Aethionema arabicum HOM05D000101 ORTHO05D000089 4.7e-07 58.2 68 44.1
CARHR052140 Cardamine hirsuta HOM05D000101 ORTHO05D000089 4.7e-07 58.2 67 52.2
Aa31LG1G2310 Aethionema arabicum HOM05D000101 ORTHO05D000089 6.1e-07 57.8 66 48.5
BcaC08g42981 Brassica carinata HOM05D000101 ORTHO05D000089 6.1e-07 57.8 66 54.5
C08p47540 Brassica napus HOM05D000101 ORTHO05D000089 6.1e-07 57.8 77 49.4
BolC8t52295H Brassica oleracea HOM05D000101 ORTHO05D000089 6.1e-07 57.8 77 49.4
Thhalv10023256m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 6.1e-07 57.8 67 44.8
C09p15580 Brassica napus HOM05D000101 ORTHO05D000089 8.0e-07 57.4 76 42.1
A09p13130 Brassica napus HOM05D000101 ORTHO05D000089 1.0e-06 57.0 76 42.1
C09p15570 Brassica napus HOM05D000101 ORTHO05D000089 1.0e-06 57.0 66 48.5
BraA09t36959Z Brassica rapa HOM05D000101 ORTHO05D000089 1.0e-06 57.0 76 42.1
Aa31LG1G2480 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.4e-06 56.6 58 50.0
CARHR051470 Cardamine hirsuta HOM05D000101 ORTHO05D000089 1.4e-06 56.6 70 51.4
BcaC04g22760 Brassica carinata HOM05D000101 ORTHO05D000089 1.8e-06 56.2 76 42.1
CARHR220980 Cardamine hirsuta HOM05D000101 ORTHO05D000089 1.8e-06 56.2 66 53.0
Thhalv10006784m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 1.8e-06 56.2 67 47.8
AT1G12290 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 2.3e-06 55.8 58 53.4
Sp1g10900 Schrenkiella parvula HOM05D000101 ORTHO05D000089 2.3e-06 55.8 66 48.5
AL1G23500 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 3.0e-06 55.5 53 56.6
BcaC07g42585 Brassica carinata HOM05D000101 ORTHO05D000089 3.0e-06 55.5 61 50.8
BraA08t35213Z Brassica rapa HOM05D000101 ORTHO05D000089 3.0e-06 55.5 68 52.9
CARHR156260 Cardamine hirsuta HOM05D000101 ORTHO05D000089 3.0e-06 55.5 67 50.7
Aa31LG1G2490 Aethionema arabicum HOM05D000101 ORTHO05D000089 4.0e-06 55.1 53 50.9
BcaC07g41717 Brassica carinata HOM05D000101 ORTHO05D000089 4.0e-06 55.1 69 49.3
CARHR049700 Cardamine hirsuta HOM05D000101 ORTHO05D000089 4.0e-06 55.1 58 50.0
Thhalv10023257m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 4.0e-06 55.1 68 51.5
Thhalv10023258m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 4.0e-06 55.1 68 51.5
BcaB03g13138 Brassica carinata HOM05D000101 ORTHO05D000089 5.2e-06 54.7 48 64.6
Aa31LG1G3620 Aethionema arabicum HOM05D000101 ORTHO05D000089 8.8e-06 53.9 62 51.6
AT1G61180 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 8.8e-06 53.9 77 45.5
CARHR049180 Cardamine hirsuta HOM05D000101 ORTHO05D000089 8.8e-06 53.9 67 47.8
CARHR049590 Cardamine hirsuta HOM05D000101 ORTHO05D000089 8.8e-06 53.9 68 47.1
CARHR255820 Cardamine hirsuta HOM05D000101 ORTHO05D000089 8.8e-06 53.9 76 39.5


User provided reference genes

Program Settings