Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.3e-88 329.7 165 100.0
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 5.9e-70 267.7 163 84.0
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 5.9e-70 267.7 163 84.0
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 2.8e-67 258.8 163 81.6
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 5.7e-65 251.1 163 79.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 3.7e-64 248.4 165 80.0
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 4.9e-64 248.1 165 80.6
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.4e-63 246.5 165 79.4
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-63 246.5 165 79.4
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.4e-63 246.5 165 79.4
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.4e-63 246.5 165 79.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.3e-61 240.0 166 76.5
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 6.6e-61 237.7 163 75.5
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 6.6e-61 237.7 163 75.5
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 5.6e-60 234.6 163 74.2
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 6.2e-59 231.1 165 74.5
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.0e-58 230.3 165 73.9
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.8e-58 229.6 165 74.5
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 2.3e-58 229.2 166 73.5
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 4.0e-58 228.4 163 72.4
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 5.2e-58 228.0 144 81.2
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.4e-57 225.3 163 71.8
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.1e-55 220.3 163 69.3
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.1e-55 218.4 130 82.3
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.0e-53 213.8 163 67.5
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 3.0e-53 212.2 163 65.6
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.1e-52 210.3 163 65.0
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.9e-52 209.5 163 65.6
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.9e-52 209.5 163 66.3
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 2.5e-52 209.1 163 65.6
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.5e-52 209.1 134 76.9
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 4.3e-52 208.4 163 65.0
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 7.3e-52 207.6 163 63.8
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.8e-51 205.7 163 63.8
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.8e-51 205.7 163 63.8
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 2.8e-51 205.7 163 63.8
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 2.8e-51 205.7 163 64.4
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 3.6e-51 205.3 166 65.1
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 8.1e-51 204.1 163 64.4
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 8.1e-51 204.1 163 64.4
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.1e-50 203.8 163 63.8
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.4e-50 203.4 165 65.5
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.3e-50 202.6 163 63.2
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.3e-50 202.6 162 62.3
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.1e-50 202.2 162 63.6
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.0e-50 201.8 162 64.2
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.0e-50 201.8 162 64.2
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 5.2e-50 201.4 163 62.6
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 6.8e-50 201.1 163 63.2
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 8.9e-50 200.7 126 76.2
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 8.9e-50 200.7 126 76.2
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 8.9e-50 200.7 163 62.0
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 8.9e-50 200.7 163 63.8
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 8.9e-50 200.7 163 63.8
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 8.9e-50 200.7 163 63.8
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.2e-49 200.3 163 61.3
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.2e-49 200.3 163 63.8
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.5e-49 199.9 163 62.6
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.5e-49 199.9 163 63.2
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.6e-49 199.1 163 63.2
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 3.4e-49 198.7 163 62.0
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 5.8e-49 198.0 163 63.8
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 5.8e-49 198.0 163 62.0
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 5.8e-49 198.0 165 64.2
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 7.5e-49 197.6 125 75.2
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 9.8e-49 197.2 162 64.2
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 9.8e-49 197.2 163 62.6
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-48 196.8 136 70.6
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.3e-48 196.8 163 62.6
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.3e-48 196.8 163 62.6
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.3e-48 196.8 125 75.2
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.7e-48 196.4 163 63.2
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.7e-48 196.4 163 60.1
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.7e-48 196.4 163 62.6
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 2.2e-48 196.1 163 61.3
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 2.2e-48 196.1 165 62.4
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 2.2e-48 196.1 162 61.1
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.9e-48 195.7 161 60.9
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.9e-48 195.7 163 62.6
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.7e-48 195.3 162 61.1
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.7e-48 195.3 125 76.8
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 3.7e-48 195.3 163 62.0
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 6.4e-48 194.5 162 60.5
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 8.3e-48 194.1 163 59.5
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 8.3e-48 194.1 163 60.7
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.1e-47 193.7 165 62.4
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.4e-47 193.4 163 60.1
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.4e-47 193.4 162 60.5
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.4e-47 193.4 157 61.1
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 1.9e-47 193.0 161 61.5
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.9e-47 193.0 126 75.4
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.9e-47 193.0 126 75.4
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.9e-47 193.0 162 59.9
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.9e-47 193.0 126 73.8
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 2.4e-47 192.6 165 62.4
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.4e-47 192.6 144 68.8
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.4e-47 192.6 162 61.7
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 3.2e-47 192.2 126 74.6
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 3.2e-47 192.2 163 61.3
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 4.1e-47 191.8 163 60.1
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 4.1e-47 191.8 163 62.0
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 4.1e-47 191.8 163 62.0
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 5.4e-47 191.4 163 61.3
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 5.4e-47 191.4 166 61.4
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 7.1e-47 191.0 163 61.3
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 7.1e-47 191.0 125 72.0
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 9.2e-47 190.7 125 75.2
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 9.2e-47 190.7 163 58.9
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.2e-46 190.3 164 61.6
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.1e-46 189.5 164 61.6
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 2.1e-46 189.5 162 58.6
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.1e-46 189.5 163 60.7
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.0e-45 187.2 163 58.3
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.7e-45 186.4 126 69.8
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.0e-45 185.7 162 56.2
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 6.6e-45 184.5 163 60.1
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.1e-44 183.7 163 58.3
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.1e-44 183.7 163 57.1
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 5.6e-44 181.4 163 55.8
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 5.6e-44 181.4 163 55.8
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.6e-44 181.4 126 68.3
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.6e-43 179.9 126 67.5
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 4.7e-43 178.3 136 64.7
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.8e-42 176.4 163 55.8
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.3e-42 176.0 126 66.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.1e-42 175.6 145 60.7
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 6.8e-42 174.5 163 55.8
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 6.8e-42 174.5 132 65.2
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.6e-41 172.6 145 60.7
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 9.9e-41 170.6 144 59.0
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 4.9e-40 168.3 153 56.2
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 6.4e-40 167.9 148 60.1
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.1e-39 167.2 130 64.6
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.4e-39 166.0 163 50.9
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-38 163.7 111 71.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.6e-38 163.3 112 68.8
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-38 162.5 109 68.8
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.0e-37 160.6 146 58.2
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.0e-37 160.6 155 54.2
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.6e-37 157.5 127 64.6
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-35 153.3 152 55.9
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.2e-33 147.1 105 65.7
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.6e-33 146.0 145 54.5
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 2.9e-32 142.5 107 66.4
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.7e-29 133.3 166 43.4
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.5e-28 130.2 130 49.2
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 8.1e-27 124.4 124 48.4
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 5.3e-26 121.7 129 48.8
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 9.9e-25 117.5 160 39.4
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-22 109.4 76 67.1
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 5.8e-17 91.7 120 39.2
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 5.8e-17 91.7 145 40.7
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.4e-10 70.5 65 55.4


User provided reference genes

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