Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 1.6e-191 672.9 368 100.0
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 1.8e-187 659.4 380 96.3
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 1.8e-187 659.4 368 98.9
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 2.9e-148 529.3 394 82.2
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.1e-147 527.3 394 82.0
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 1.7e-145 520.0 397 78.3
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 7.9e-114 414.8 399 66.7
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.0e-113 414.5 399 66.7
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.1e-102 377.9 409 61.1
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 2.3e-97 360.1 390 61.5
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.7e-87 326.2 423 54.8
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 1.8e-81 307.4 453 49.0
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 4.5e-77 292.7 440 48.0
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 7.7e-77 292.0 406 50.0
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.9e-76 290.0 424 48.6
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 7.2e-75 285.4 355 53.5
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 8.0e-74 282.0 430 47.9
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 3.4e-72 276.6 431 45.7
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.9e-71 273.5 427 46.4
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 6.6e-68 262.3 424 43.9
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 7.3e-67 258.8 418 43.5
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 8.0e-66 255.4 416 44.5
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 2.0e-64 250.8 415 42.4
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 4.4e-64 249.6 433 42.3
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 4.4e-64 249.6 418 44.0
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.7e-63 246.5 411 42.3
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 4.9e-63 246.1 407 43.0
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.1e-62 245.0 433 40.6
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.4e-62 244.6 410 44.6
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 2.0e-61 240.7 415 44.1
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 3.5e-61 240.0 403 42.2
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 4.6e-61 239.6 413 43.8
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 1.3e-60 238.0 405 43.5
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 1.7e-60 237.7 417 42.2
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 5.0e-60 236.1 416 42.1
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 1.9e-59 234.2 410 43.7
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.9e-59 234.2 413 41.6
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.9e-59 234.2 405 42.0
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 4.3e-59 233.0 403 41.7
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 4.3e-59 233.0 424 41.5
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.6e-59 232.6 428 40.7
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 9.5e-59 231.9 439 40.3
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.6e-58 231.1 428 40.7
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 2.8e-58 230.3 415 40.2
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 2.8e-58 230.3 408 42.4
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 1.1e-57 228.4 407 41.0
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 1.8e-57 227.6 414 42.3
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 1.8e-57 227.6 434 38.9
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 3.1e-57 226.9 415 40.7
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 3.1e-57 226.9 411 40.9
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 4.0e-57 226.5 435 40.5
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 5.2e-57 226.1 456 39.0
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 5.2e-57 226.1 439 39.4
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.2e-56 224.9 406 42.9
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 1.5e-56 224.6 401 40.1
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 2.6e-56 223.8 407 39.3
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 4.4e-56 223.0 405 41.5
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 5.8e-56 222.6 413 40.9
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 1.3e-55 221.5 438 40.0
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.2e-55 220.7 423 39.0
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 2.9e-55 220.3 424 38.9
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 2.9e-55 220.3 425 40.2
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.9e-55 219.5 449 38.1
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 4.9e-55 219.5 419 39.6
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 6.4e-55 219.2 414 41.1
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 1.1e-54 218.4 410 39.5
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 1.9e-54 217.6 430 37.7
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 4.1e-54 216.5 397 39.8
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 5.4e-54 216.1 414 39.4
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 9.2e-54 215.3 394 39.3
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.2e-53 214.9 433 38.6
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 4.6e-53 213.0 416 37.5
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 6.0e-53 212.6 387 41.1
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 7.8e-53 212.2 427 36.3
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.3e-52 211.5 431 38.3
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.3e-52 211.5 459 37.9
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 1.7e-52 211.1 503 36.6
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.7e-52 211.1 395 41.3
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 1.7e-52 211.1 407 38.8
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 3.9e-52 209.9 490 36.9
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 6.6e-52 209.1 365 42.2
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 8.6e-52 208.8 402 37.1
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.1e-51 208.4 398 38.9
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 7.3e-51 205.7 413 38.0
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 1.2e-50 204.9 361 41.6
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 1.6e-50 204.5 414 38.2
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 2.8e-50 203.8 425 37.2
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.8e-50 203.8 392 38.0
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 4.7e-50 203.0 367 39.8
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 4.7e-50 203.0 404 38.9
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.8e-49 201.1 399 38.1
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.3e-49 200.7 387 40.1
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.1e-49 200.3 427 37.5
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 6.8e-49 199.1 354 39.0
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 2.0e-48 197.6 390 39.2
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 2.2e-47 194.1 411 36.5
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 3.7e-47 193.4 373 39.4
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 1.2e-45 188.3 314 45.2
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 2.7e-45 187.2 407 40.3
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.0e-44 185.3 406 36.9
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 1.5e-43 181.4 407 38.6
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 2.5e-43 180.6 382 36.4
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 8.1e-42 175.6 548 31.0
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 1.1e-41 175.3 247 49.4
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 2.2e-39 167.5 435 32.6
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.9e-39 167.2 390 35.1
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 6.4e-39 166.0 290 43.8
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 3.0e-36 157.1 290 40.3
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.6e-35 152.1 341 37.8
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.4e-33 147.5 320 38.4
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 4.0e-33 146.7 427 30.2
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 1.7e-28 131.3 339 34.2
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 6.6e-28 129.4 384 30.7
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.3e-27 127.1 92 70.7
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 2.1e-26 124.4 428 28.3
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 2.8e-26 124.0 185 47.6
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 3.6e-26 123.6 367 33.8
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 9.0e-25 119.0 110 55.5
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 3.8e-23 113.6 415 28.9
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 6.4e-23 112.8 366 30.3
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.9e-22 111.3 278 33.8
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.3e-20 104.4 276 33.3
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 4.5e-16 90.1 85 50.6
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 7.6e-16 89.4 104 50.0
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 2.5e-14 84.3 248 30.6
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 3.9e-12 77.0 171 35.7
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 1.9e-11 74.7 176 33.5
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 2.1e-10 71.2 62 50.0
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 8.2e-10 69.3 198 33.8
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 1.8e-09 68.2 75 49.3
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 2.4e-09 67.8 122 38.5
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.2e-08 65.5 61 52.5
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 5.9e-08 63.2 275 29.8
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 6.5e-07 59.7 56 51.8
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.9e-06 58.2 58 46.6
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.3e-06 55.8 56 46.4


User provided reference genes

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