Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35199H Brassica oleracea HOM05D007582 ORTHO05D009645 4.2e-58 227.6 101 100.0
BcaC08g42847 Brassica carinata HOM05D007582 ORTHO05D009645 3.5e-57 224.6 101 99.0
C06p00630 Brassica napus HOM05D007582 ORTHO05D009645 3.5e-57 224.6 101 99.0
BcaB07g33949 Brassica carinata HOM05D007582 ORTHO05D009645 9.0e-53 209.9 101 94.1
Sp1g33530 Schrenkiella parvula HOM05D007582 ORTHO05D009645 5.8e-52 207.2 101 90.1
CARHR035920 Cardamine hirsuta HOM05D007582 ORTHO05D009645 9.9e-52 206.5 101 88.1
A06p11790 Brassica napus HOM05D007582 ORTHO05D009645 2.9e-51 204.9 101 93.1
Thhalv10012348m.g Eutrema salsugineum HOM05D007582 ORTHO05D009645 3.8e-51 204.5 101 87.1
AL1G52300 Arabidopsis lyrata HOM05D007582 ORTHO05D009645 8.4e-51 203.4 102 89.2
AT1G44414 Arabidopsis thaliana HOM05D007582 ORTHO05D009645 3.2e-50 201.4 102 88.2
Carub.0001s3518 Capsella rubella HOM05D007582 ORTHO05D009645 9.6e-47 189.9 104 83.7
THA.LOC104817375 Tarenaya hassleriana HOM05D007582 ORTHO05D009645 2.8e-46 188.3 109 79.8
Aa31LG6G9350 Aethionema arabicum HOM05D007582 ORTHO05D009645 8.1e-46 186.8 104 79.8
Peaxi162Scf00051g00105 Petunia axillaris HOM05D007582 ORTHO05D009645 6.7e-40 167.2 97 75.3
Atru.chr13.1488 Acer truncatum HOM05D007582 ORTHO05D009645 1.9e-39 165.6 105 69.5
Solyc06g060300.1 Solanum lycopersicum HOM05D007582 ORTHO05D009645 1.9e-39 165.6 106 68.9
MD15G1347500 Malus domestica HOM05D007582 ORTHO05D009645 3.3e-39 164.9 110 69.1
Thecc.08G126100 Theobroma cacao HOM05D007582 ORTHO05D009645 3.3e-39 164.9 112 67.9
Manes.18G077606 Manihot esculenta HOM05D007582 ORTHO05D009645 4.3e-39 164.5 110 68.2
TWI34G1919 Tripterygium wilfordii HOM05D007582 ORTHO05D009645 5.7e-39 164.1 112 67.0
CAN.G1040.1 Capsicum annuum HOM05D007582 ORTHO05D009645 7.4e-39 163.7 108 68.5
Cpa.g.sc64.90 Carica papaya HOM05D007582 ORTHO05D009645 7.4e-39 163.7 114 67.5
Oeu028565.1 Olea europaea HOM05D007582 ORTHO05D009645 7.4e-39 163.7 113 66.4
Sopen06g020420 Solanum pennellii HOM05D007582 ORTHO05D009645 7.4e-39 163.7 106 67.9
Prupe.1G495300 Prunus persica HOM05D007582 ORTHO05D009645 1.6e-38 162.5 112 67.9
Aqoxy6G00171 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 2.8e-38 161.8 110 64.5
PGR042G2864 Punica granatum HOM05D007582 ORTHO05D009645 2.8e-38 161.8 109 66.1
QL09p034466 Quercus lobata HOM05D007582 ORTHO05D009645 2.8e-38 161.8 110 67.3
CANSAT11G2348 Cannabis sativa HOM05D007582 ORTHO05D009645 3.7e-38 161.4 109 66.1
PGSC0003DMG400041136 Solanum tuberosum HOM05D007582 ORTHO05D009645 3.7e-38 161.4 108 66.7
CAN.G1040.3 Capsicum annuum HOM05D007582 ORTHO05D009645 6.3e-38 160.6 108 67.6
Lalb_Chr17g0343701 Lupinus albus HOM05D007582 ORTHO05D009645 6.3e-38 160.6 110 68.2
Potri.002G083100 Populus trichocarpa HOM05D007582 ORTHO05D009645 6.3e-38 160.6 114 64.0
MELO3C010615.2 Cucumis melo HOM05D007582 ORTHO05D009645 8.2e-38 160.2 112 65.2
Nitab4.5_0003719g0010 Nicotiana tabacum HOM05D007582 ORTHO05D009645 1.1e-37 159.8 111 64.0
SalBow6G5334 Salvia bowleyana HOM05D007582 ORTHO05D009645 1.1e-37 159.8 106 65.1
Haze_00435 Corylus avellana HOM05D007582 ORTHO05D009645 1.4e-37 159.5 111 66.7
Migut.N03282 Erythranthe guttata HOM05D007582 ORTHO05D009645 1.8e-37 159.1 101 69.3
Dinv07214 Davidia involucrata HOM05D007582 ORTHO05D009645 2.4e-37 158.7 117 61.5
RcHm_v2.0_Chr6g0295891 Rosa chinensis HOM05D007582 ORTHO05D009645 2.4e-37 158.7 109 67.0
MSTRG.22408 Avicennia marina HOM05D007582 ORTHO05D009645 3.1e-37 158.3 107 65.4
TAR381G0802 Trochodendron aralioides HOM05D007582 ORTHO05D009645 3.1e-37 158.3 110 67.3
Duzib116G0545 Durio zibethinus HOM05D007582 ORTHO05D009645 6.9e-37 157.1 109 64.2
CiPaw.05G221000 Carya illinoinensis HOM05D007582 ORTHO05D009645 9.0e-37 156.8 109 67.0
ClCG08G005690 Citrullus lanatus HOM05D007582 ORTHO05D009645 9.0e-37 156.8 113 62.8
FAN15G1067 Fragaria x ananassa HOM05D007582 ORTHO05D009645 9.0e-37 156.8 109 65.1
Sc22g0004000 Simmondsia chinensis HOM05D007582 ORTHO05D009645 1.2e-36 156.4 110 66.4
Manes.02G163800 Manihot esculenta HOM05D007582 ORTHO05D009645 1.5e-36 156.0 110 64.5
Medtr1g029990 Medicago truncatula HOM05D007582 ORTHO05D009645 2.6e-36 155.2 111 64.0
Lj4P628T29 Lonicera japonica HOM05D007582 ORTHO05D009645 3.4e-36 154.8 108 63.0
Lj1g0018777 Lotus japonicus HOM05D007582 ORTHO05D009645 4.5e-36 154.5 111 62.2
PSO528G0093 Papaver somniferum HOM05D007582 ORTHO05D009645 4.5e-36 154.5 105 68.6
SGA_v2.0_scaffold28G11996 Striga asiatica HOM05D007582 ORTHO05D009645 7.6e-36 153.7 112 62.5
PSO170G1805 Papaver somniferum HOM05D007582 ORTHO05D009645 1.3e-35 152.9 105 67.6
TPR.G25776 Trifolium pratense HOM05D007582 ORTHO05D009645 1.3e-35 152.9 112 59.8
Hma1.2p1_0054F.1_g031010 Hydrangea macrophylla HOM05D007582 ORTHO05D009645 2.2e-35 152.1 105 63.8
Nn5g28305 Nelumbo nucifera HOM05D007582 ORTHO05D009645 2.2e-35 152.1 112 60.7
DCAR_016167 Daucus carota HOM05D007582 ORTHO05D009645 3.8e-35 151.4 101 66.3
RhsimUnG0092400 Rhododendron simsii HOM05D007582 ORTHO05D009645 5.0e-35 151.0 119 56.3
HanXRQChr15g0465231 Helianthus annuus HOM05D007582 ORTHO05D009645 1.4e-34 149.4 104 63.5
Ciclev10002916m.g Citrus clementina HOM05D007582 ORTHO05D009645 1.9e-34 149.1 107 60.7
vmacro00836 Vaccinium macrocarpon HOM05D007582 ORTHO05D009645 1.9e-34 149.1 118 55.9
Aqoxy6G00227 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 4.2e-34 147.9 103 62.1
Gohir.D06G045500 Gossypium hirsutum HOM05D007582 ORTHO05D009645 5.5e-34 147.5 102 66.7
Nn1g00264 Nelumbo nucifera HOM05D007582 ORTHO05D009645 9.3e-34 146.7 111 59.5
Cc10_g11990 Coffea canephora HOM05D007582 ORTHO05D009645 1.2e-33 146.4 115 56.5
CDE06G0523 Ceratophyllum demersum HOM05D007582 ORTHO05D009645 2.1e-33 145.6 112 58.0
CsaV3_6G034440 Cucumis sativus L. HOM05D007582 ORTHO05D009645 2.1e-33 145.6 102 61.8
VMungo0647G1492 Vigna mungo HOM05D007582 ORTHO05D009645 2.1e-33 145.6 110 60.0
Gorai.010G050500 Gossypium raimondii HOM05D007582 ORTHO05D009645 2.7e-33 145.2 102 65.7
Phvul.008G160900 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 3.5e-33 144.8 110 63.6
Phvul.008G167875 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 3.5e-33 144.8 110 63.6
CSS0038396 Camellia sinensis var. sinensis HOM05D007582 ORTHO05D009645 1.0e-32 143.3 119 56.3
Glyma.14G150500 Glycine max HOM05D007582 ORTHO05D009645 1.3e-32 142.9 115 60.0
Sed0002225 Sechium edule HOM05D007582 ORTHO05D009645 3.9e-32 141.4 114 55.3
ECA233G1368 Erigeron canadensis HOM05D007582 ORTHO05D009645 5.1e-32 141.0 98 62.2
Zm00001eb348620 Zea mays HOM05D007582 ORTHO05D009645 9.7e-31 136.7 107 57.9
Psat6g041680 Pisum sativum HOM05D007582 ORTHO05D009139 6.3e-30 134.0 96 60.4
HPP92_006841 Vanilla planifolia HOM05D007582 ORTHO05D009645 6.3e-30 134.0 120 51.7
ATR0584G060 Amborella trichopoda HOM05D007582 ORTHO05D009645 1.1e-29 133.3 114 54.4
SHI08583 Sapria himalayana HOM05D007582 ORTHO05D009645 1.8e-29 132.5 112 55.4
Nn3g18690 Nelumbo nucifera HOM05D007582 ORTHO05D009645 9.0e-29 130.2 100 56.0
Gohir.A06G045000 Gossypium hirsutum HOM05D007582 ORTHO05D009645 1.5e-28 129.4 99 61.6
arahy.Tifrunner.gnm1.ann1.WSBZ3R Arachis hypogaea HOM05D007582 ORTHO05D009645 1.0e-27 126.7 94 66.0
Os05g0435400 Oryza sativa ssp. japonica HOM05D007582 ORTHO05D009645 5.0e-27 124.4 113 54.9
SMO143G0209 Selaginella moellendorffii HOM05D007582 ORTHO05D009645 1.9e-26 122.5 101 51.5
Mapoly0085s0071 Marchantia polymorpha HOM05D007582 ORTHO05D009645 6.5e-19 97.4 121 38.8
Nitab4.5_0011334g0030 Nicotiana tabacum HOM05D007582 ORTHO05D009645 1.2e-17 93.2 73 56.2
Pp3c19_19360 Physcomitrium patens HOM05D007582 ORTHO05D009645 3.6e-17 91.7 120 38.3
Aa31LG6G9370 Aethionema arabicum HOM05D007582 ORTHO05D009645 8.8e-16 87.0 101 48.5
Nn4g24512 Nelumbo nucifera HOM05D007582 ORTHO05D009645 9.1e-13 77.0 71 50.7
Nn1g08790 Nelumbo nucifera HOM05D007582 ORTHO05D009645 2.5e-10 68.9 35 74.3
AagrBONN_evm.TU.Sc2ySwM_362.1959 Anthoceros agrestis HOM05D007582 ORTHO05D009645 9.4e-10 67.0 64 48.4
Phvul.L001669 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 1.0e-08 63.5 42 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2461 Anthoceros agrestis HOM05D007582 ORTHO05D009645 1.8e-08 62.8 62 46.8


User provided reference genes

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