Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 4.8e-213 744.2 365 100.0
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 1.1e-212 743.0 365 99.7
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 3.1e-212 741.5 365 99.5
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 3.2e-209 731.5 366 98.4
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 5.7e-206 720.7 369 95.9
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 3.6e-192 674.9 365 91.5
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.8e-191 672.5 370 89.2
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 6.7e-191 670.6 370 88.1
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 9.7e-190 666.8 370 88.1
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 4.8e-189 664.5 370 87.6
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 2.4e-188 662.1 370 87.3
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.5e-185 652.9 370 85.7
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 1.3e-181 639.8 371 84.6
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 5.7e-158 561.2 370 75.7
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 1.2e-155 553.5 370 73.0
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 2.5e-145 519.2 369 67.5
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 4.4e-142 508.4 372 65.1
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 2.2e-141 506.1 367 65.4
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 7.8e-139 497.7 367 65.9
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 5.6e-137 491.5 370 63.8
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 8.1e-136 487.6 370 63.8
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.4e-135 486.9 373 62.2
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.4e-135 486.9 373 62.5
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.4e-135 486.9 375 62.4
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.3e-135 486.1 373 62.2
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.0e-135 485.3 372 62.6
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.4e-134 482.3 372 62.1
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-133 479.9 372 62.4
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 4.6e-131 471.9 367 62.7
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.0e-130 470.7 367 61.3
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.3e-130 469.5 367 61.9
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 5.1e-130 468.4 367 61.6
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 9.6e-129 464.2 367 60.5
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 3.6e-128 462.2 367 62.4
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 3.6e-128 462.2 367 61.0
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.4e-127 460.3 370 61.4
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 2.0e-126 456.4 370 61.4
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 3.2e-124 449.1 372 59.7
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 6.0e-123 444.9 373 61.9
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 1.0e-122 444.1 367 60.8
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 2.3e-122 443.0 367 60.2
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 5.1e-122 441.8 372 58.9
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 6.6e-122 441.4 367 60.2
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.1e-121 440.7 373 60.1
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 1.5e-121 440.3 374 60.2
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 9.6e-121 437.6 373 61.1
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 1.3e-120 437.2 367 57.8
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 1.6e-120 436.8 377 59.4
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.4e-119 433.7 367 59.1
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 2.4e-119 433.0 378 60.1
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 4.0e-119 432.2 376 58.2
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 1.7e-117 426.8 367 57.8
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 4.2e-116 422.2 368 58.4
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 4.2e-116 422.2 378 57.9
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 5.4e-116 421.8 377 56.8
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 7.1e-116 421.4 358 58.9
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.3e-116 421.0 368 58.2
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 1.6e-115 420.2 368 56.8
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.1e-115 419.9 368 58.2
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 2.7e-115 419.5 379 57.5
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 4.6e-115 418.7 382 58.1
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.0e-115 418.3 367 55.0
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 7.9e-115 417.9 370 58.1
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.0e-114 417.5 368 57.9
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.0e-114 417.5 368 57.9
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 6.6e-114 414.8 376 56.9
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 2.5e-113 412.9 372 56.2
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 4.3e-113 412.1 367 56.7
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 9.6e-113 411.0 367 58.3
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 1.3e-112 410.6 377 54.9
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.3e-112 410.6 388 55.9
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 4.8e-112 408.7 369 56.9
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.8e-111 406.8 367 56.4
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.9e-111 404.8 353 54.7
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 7.6e-110 401.4 376 55.3
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 4.9e-109 398.7 373 55.2
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.9e-108 396.7 373 55.0
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 2.4e-108 396.4 371 55.8
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 3.2e-108 396.0 377 53.8
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 4.2e-108 395.6 368 55.7
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.2e-108 395.6 378 55.3
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 4.2e-108 395.6 373 55.0
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 7.1e-108 394.8 374 53.7
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 9.3e-108 394.4 373 56.6
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 9.3e-108 394.4 378 55.3
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 1.3e-106 390.6 372 54.8
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 6.7e-106 388.3 369 55.0
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 8.7e-106 387.9 368 54.3
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 4.3e-105 385.6 372 54.6
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 1.3e-104 384.0 367 53.7
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.3e-104 384.0 366 56.0
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 1.6e-104 383.6 374 52.7
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.1e-104 383.3 367 53.1
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 3.7e-104 382.5 365 54.2
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.4e-103 380.6 368 53.5
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.3e-103 378.6 366 53.3
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 6.9e-103 378.3 352 54.5
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 6.9e-103 378.3 385 52.2
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 3.8e-101 372.5 372 54.0
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 1.1e-100 370.9 356 53.1
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 2.1e-99 366.7 368 50.8
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 6.7e-98 361.7 384 50.0
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 4.6e-91 339.0 355 47.0
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 8.2e-88 328.2 340 50.6
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.1e-87 327.8 340 50.6
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 2.7e-83 313.2 455 39.8
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 3.0e-82 309.7 375 45.9
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 2.6e-78 296.6 381 44.1
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 4.5e-78 295.8 297 50.5
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 5.0e-77 292.4 297 51.5
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 1.0e-74 284.6 379 41.2
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 3.3e-73 279.6 368 42.7
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 9.7e-73 278.1 363 44.1
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 5.5e-68 262.3 343 39.4
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 7.2e-68 261.9 341 41.1
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 1.3e-64 251.1 373 38.3
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 5.0e-61 239.2 368 37.2
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 6.3e-56 222.2 232 53.9
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.4e-55 220.3 182 57.7
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 4.2e-52 209.5 204 52.0
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 2.3e-50 203.8 203 45.8
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 3.7e-48 196.4 251 39.4
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.2e-43 181.4 243 39.1
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 1.4e-42 177.9 175 54.9
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.2e-35 154.8 128 57.0
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 3.6e-35 153.3 285 31.2
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 3.6e-35 153.3 162 46.9
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 6.2e-35 152.5 128 55.5
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 9.8e-33 145.2 95 73.7
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 9.8e-33 145.2 95 73.7
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.3e-32 144.8 128 55.5
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 2.2e-32 144.1 145 49.0
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 3.6e-27 126.7 108 56.5
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.4e-23 114.8 91 57.1
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 2.4e-23 114.0 288 27.1
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 7.1e-23 112.5 88 58.0
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.2e-23 112.1 91 56.0
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 3.0e-21 107.1 247 35.2
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 8.6e-21 105.5 91 52.7
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 7.3e-20 102.4 109 46.8
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 1.2e-19 101.7 58 84.5
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.6e-19 100.1 96 50.0
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 1.4e-18 98.2 91 58.2
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 3.5e-14 83.6 68 54.4
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 3.3e-12 77.0 105 46.7
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 9.6e-12 75.5 77 50.6
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 3.6e-11 73.6 45 82.2
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.2e-11 72.8 65 53.8
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.1e-10 72.0 59 57.6
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 3.2e-07 60.5 77 40.3


User provided reference genes

Program Settings