Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.3e-140 503.1 254 100.0
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 2.1e-138 495.7 254 98.0
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 1.5e-133 479.6 254 94.9
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 4.4e-133 478.0 254 94.9
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 7.6e-125 450.7 255 89.0
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.6e-114 416.4 250 84.4
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 5.0e-108 394.8 249 79.5
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 6.7e-105 384.4 246 80.5
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.0e-101 372.9 250 77.6
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.2e-100 369.4 252 77.0
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.9e-99 366.3 249 76.7
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 8.8e-89 330.9 265 67.2
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.5e-80 303.5 246 63.8
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.5e-59 233.8 266 51.5
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 7.3e-59 231.5 266 51.1
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.4e-57 227.3 259 50.6
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 5.2e-57 225.3 253 50.2
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 2.0e-56 223.4 259 50.6
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 6.4e-55 218.4 243 51.0
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.1e-54 217.6 265 48.7
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 3.2e-54 216.1 256 51.6
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 5.4e-54 215.3 244 50.8
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 9.2e-54 214.5 259 49.0
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.6e-53 213.8 264 48.9
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 3.5e-53 212.6 256 49.6
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 4.6e-53 212.2 274 47.1
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 4.6e-53 212.2 274 46.4
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 1.3e-52 210.7 260 48.8
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 1.7e-52 210.3 260 48.1
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.7e-52 210.3 261 49.4
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 2.3e-52 209.9 259 47.5
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 2.3e-52 209.9 259 49.0
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 3.9e-52 209.1 252 47.6
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 5.0e-52 208.8 232 50.4
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 5.0e-52 208.8 249 49.0
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.1e-51 207.6 272 47.8
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.5e-51 207.2 232 53.0
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.9e-51 206.8 238 51.3
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 2.5e-51 206.5 269 47.6
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 3.3e-51 206.1 259 46.7
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 3.3e-51 206.1 254 49.2
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 5.6e-51 205.3 233 53.2
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 5.6e-51 205.3 266 45.5
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 7.3e-51 204.9 238 50.8
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 7.3e-51 204.9 262 46.2
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 2.1e-50 203.4 262 44.3
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.8e-50 203.0 271 43.5
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 2.8e-50 203.0 249 49.0
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 2.8e-50 203.0 238 49.6
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 4.7e-50 202.2 253 45.8
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 4.7e-50 202.2 229 50.7
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 1.0e-49 201.1 261 46.4
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.8e-49 200.3 270 43.3
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 1.8e-49 200.3 247 47.4
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.8e-49 200.3 293 44.7
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 3.1e-49 199.5 253 47.4
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 8.9e-49 198.0 270 44.8
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 2.0e-48 196.8 256 47.3
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.4e-48 196.1 232 50.0
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 4.4e-48 195.7 271 45.8
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 9.8e-48 194.5 257 45.9
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 4.9e-47 192.2 298 43.0
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 1.9e-46 190.3 247 44.9
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.4e-46 189.9 268 43.3
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.1e-46 189.1 188 55.3
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.1e-46 189.1 188 55.3
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 4.1e-46 189.1 273 42.1
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.7e-45 186.4 265 46.0
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.7e-45 186.4 278 42.1
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 7.8e-45 184.9 254 44.5
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.0e-44 184.5 266 44.7
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 3.9e-44 182.6 247 44.1
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 6.6e-44 181.8 267 40.8
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.1e-43 181.0 245 42.9
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.1e-43 181.0 262 45.0
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 5.6e-43 178.7 275 41.5
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 5.6e-43 178.7 255 43.9
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 9.5e-43 177.9 262 42.7
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 2.1e-42 176.8 188 50.0
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 4.7e-42 175.6 263 41.1
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 1.1e-41 174.5 151 57.6
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.3e-41 173.3 150 58.7
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 2.3e-41 173.3 270 42.6
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 4.0e-41 172.6 257 41.6
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 8.9e-41 171.4 245 42.4
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.2e-40 171.0 188 52.1
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.5e-40 170.6 207 48.8
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 2.6e-40 169.9 252 41.3
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 4.4e-40 169.1 254 42.1
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 2.9e-39 166.4 189 50.3
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 3.7e-39 166.0 257 42.8
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 6.4e-39 165.2 257 40.5
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 2.7e-37 159.8 253 40.7
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.3e-36 157.5 271 38.0
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 8.6e-36 154.8 278 37.8
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 1.9e-35 153.7 278 37.8
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 1.9e-35 153.7 265 38.5
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 9.5e-35 151.4 222 41.4
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-33 147.9 213 43.2
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 5.2e-33 145.6 245 38.8
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 6.8e-33 145.2 152 48.0
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.6e-32 143.3 205 41.0
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 3.4e-32 142.9 213 42.7
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 7.6e-32 141.7 262 34.7
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 7.6e-32 141.7 256 37.1
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 9.9e-32 141.4 244 38.1
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.3e-31 141.0 260 38.5
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.3e-31 141.0 247 34.8
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.7e-31 140.6 257 37.4
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 2.9e-31 139.8 153 47.1
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.9e-31 139.8 249 36.1
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 2.9e-31 139.8 266 36.1
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.8e-31 139.4 255 38.4
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.9e-31 139.0 199 43.7
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 6.4e-31 138.7 285 33.7
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 6.0e-29 132.1 247 35.2
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 6.0e-29 132.1 262 36.3
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 8.6e-28 128.3 248 33.1
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 2.5e-27 126.7 250 35.2
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 2.5e-27 126.7 250 35.2
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 3.3e-27 126.3 95 66.3
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 4.3e-27 125.9 111 60.4
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 2.1e-26 123.6 256 31.6
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 3.6e-26 122.9 251 35.1
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 2.6e-24 116.7 179 39.1
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 3.4e-24 116.3 155 42.6
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 9.9e-24 114.8 153 41.2
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 2.9e-23 113.2 96 62.5
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 6.0e-21 105.5 65 78.5
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 8.7e-20 101.7 196 34.2
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.5e-19 100.1 139 43.2
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 6.2e-18 95.5 242 30.2
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.1e-17 93.2 185 35.1
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 3.4e-16 89.7 146 39.0
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 2.9e-15 86.7 215 32.6
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 6.4e-15 85.5 84 53.6
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 8.4e-15 85.1 70 64.3
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 1.4e-14 84.3 93 53.8
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 4.2e-14 82.8 171 33.9
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 5.4e-14 82.4 106 47.2
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 5.3e-09 65.9 55 60.0


User provided reference genes

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