Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 7.9e-146 520.4 256 100.0
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 7.9e-146 520.4 256 100.0
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 9.3e-131 470.3 259 92.3
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 1.2e-125 453.4 255 91.0
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 4.8e-119 431.4 258 85.7
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 6.3e-103 377.9 259 76.1
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 7.0e-102 374.4 268 75.4
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 3.5e-101 372.1 261 73.2
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 4.8e-95 351.7 259 72.6
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.0e-92 344.0 263 70.0
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.0e-92 344.0 267 69.7
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 5.7e-88 328.2 263 70.0
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 5.0e-84 315.1 269 65.4
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 6.1e-82 308.1 221 73.8
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 9.8e-72 274.2 283 57.2
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 9.2e-70 267.7 288 56.2
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.5e-67 260.4 282 54.3
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 1.1e-65 254.2 283 53.0
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 2.6e-64 249.6 281 54.1
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 5.8e-64 248.4 287 53.3
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 5.4e-62 241.9 278 52.2
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 5.4e-62 241.9 273 55.7
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 9.2e-62 241.1 280 51.1
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.2e-61 240.7 286 53.1
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.6e-61 240.4 276 51.8
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 2.3e-60 236.5 277 50.5
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 3.0e-60 236.1 272 51.8
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 5.1e-60 235.3 277 50.2
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 3.3e-59 232.6 263 55.5
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 3.3e-59 232.6 280 50.4
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 1.6e-58 230.3 277 49.1
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 2.8e-58 229.6 278 52.5
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 8.1e-58 228.0 276 50.4
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 8.1e-58 228.0 276 50.4
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 8.1e-58 228.0 276 50.4
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 8.1e-58 228.0 276 50.4
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 2.0e-56 223.4 275 49.5
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-54 217.6 269 48.3
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.4e-54 216.5 301 45.5
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 1.9e-46 190.3 267 47.9
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.7e-39 167.2 274 42.0
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.1e-38 164.5 251 43.4
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 2.1e-34 150.2 292 40.4
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 5.8e-32 142.1 296 36.8
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 6.4e-31 138.7 265 40.8
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 8.4e-31 138.3 299 33.4
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.9e-30 137.1 264 39.4
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 4.2e-30 136.0 309 35.3
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 5.5e-30 135.6 308 33.4
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 2.1e-29 133.7 295 36.3
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 3.5e-29 132.9 288 35.1
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 1.8e-28 130.6 301 36.9
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.8e-28 130.6 264 39.0
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.8e-28 130.6 292 34.6
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 2.3e-28 130.2 303 35.0
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 2.3e-28 130.2 303 35.0
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 3.0e-28 129.8 279 33.3
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 3.9e-28 129.4 302 37.1
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 5.1e-28 129.0 280 37.9
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 6.7e-28 128.6 306 35.3
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 6.7e-28 128.6 318 33.6
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 6.7e-28 128.6 293 34.5
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 2.5e-27 126.7 301 34.9
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 5.6e-27 125.6 295 33.9
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 7.4e-27 125.2 255 36.5
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 7.4e-27 125.2 288 36.8
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 9.6e-27 124.8 282 35.8
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 2.1e-26 123.6 308 32.1
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.1e-26 123.6 311 32.5
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 2.8e-26 123.2 296 36.1
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 4.8e-26 122.5 313 35.1
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 6.2e-26 122.1 299 34.8
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 8.2e-26 121.7 265 35.8
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 8.2e-26 121.7 181 45.3
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 1.1e-25 121.3 253 37.9
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 1.8e-25 120.6 171 47.4
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.4e-25 120.2 280 36.4
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 4.0e-25 119.4 270 35.9
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 5.3e-25 119.0 299 35.8
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 6.9e-25 118.6 283 36.4
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 6.9e-25 118.6 297 33.7
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.5e-24 117.5 303 33.7
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 1.5e-24 117.5 296 35.5
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 2.0e-24 117.1 285 35.1
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 2.0e-24 117.1 299 30.4
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 2.6e-24 116.7 298 32.6
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 3.4e-24 116.3 275 32.7
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 3.4e-24 116.3 294 34.0
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 5.8e-24 115.5 193 43.5
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 5.8e-24 115.5 311 33.4
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 1.0e-23 114.8 280 33.6
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.0e-23 114.8 296 34.8
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.0e-23 114.8 306 32.0
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.7e-23 114.0 311 34.4
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 2.2e-23 113.6 275 32.4
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 2.9e-23 113.2 282 33.0
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 2.9e-23 113.2 279 33.3
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 3.8e-23 112.8 296 34.1
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 4.9e-23 112.5 272 32.7
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 6.5e-23 112.1 285 32.3
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 8.4e-23 111.7 269 34.2
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 8.4e-23 111.7 256 34.8
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 1.1e-22 111.3 302 30.8
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 1.4e-22 110.9 303 33.3
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 1.4e-22 110.9 205 38.5
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 1.9e-22 110.5 204 40.7
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 1.9e-22 110.5 307 31.9
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 2.5e-22 110.2 181 42.5
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 5.5e-22 109.0 258 34.5
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 5.5e-22 109.0 297 32.3
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 7.1e-22 108.6 265 33.6
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 1.2e-21 107.8 308 32.1
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.2e-21 107.8 296 31.8
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 1.6e-21 107.5 308 32.5
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 2.1e-21 107.1 307 32.2
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 2.1e-21 107.1 260 33.8
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.7e-21 106.7 292 32.2
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.7e-21 106.7 209 38.8
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.7e-21 106.7 296 33.4
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 2.7e-21 106.7 204 38.2
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 3.5e-21 106.3 296 33.4
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 4.6e-21 105.9 282 33.3
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 7.9e-21 105.1 318 33.0
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 7.9e-21 105.1 276 33.7
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 1.3e-20 104.4 175 41.1
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.3e-20 103.6 119 49.6
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 3.9e-20 102.8 165 44.2
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 3.9e-20 102.8 294 33.0
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 3.9e-20 102.8 284 33.1
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 6.7e-20 102.1 287 35.9
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.7e-20 102.1 295 30.8
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 8.7e-20 101.7 278 34.2
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 2.5e-19 100.1 105 54.3
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 4.3e-19 99.4 265 33.6
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 5.7e-19 99.0 227 34.4
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 7.4e-19 98.6 259 32.4
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 9.7e-19 98.2 281 31.3
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 1.6e-18 97.4 143 43.4
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 2.8e-18 96.7 276 31.9
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 3.7e-18 96.3 293 29.0
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.8e-18 95.9 292 31.2
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 8.2e-18 95.1 281 34.2
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.4e-17 94.4 98 46.9
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.4e-17 93.6 253 35.2
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 6.9e-17 92.0 217 35.0
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 9.0e-17 91.7 99 52.5
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 4.5e-16 89.4 293 29.0
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 4.5e-16 89.4 265 32.1
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 7.7e-16 88.6 281 28.1
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 7.7e-16 88.6 253 34.0
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.3e-15 87.8 271 31.4
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.2e-14 83.2 182 36.8
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 5.5e-14 82.4 301 26.9
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.6e-13 80.9 172 34.3
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 2.7e-13 80.1 207 32.4
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 3.6e-13 79.7 206 34.5
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.1e-13 79.0 172 32.0
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.4e-12 77.8 254 31.1
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.4e-12 77.8 254 31.1
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 3.9e-12 76.3 278 25.9
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 6.7e-12 75.5 130 40.8
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 6.7e-12 75.5 93 48.4
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 8.8e-12 75.1 271 31.0
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.1e-11 74.7 293 28.0
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 7.4e-11 72.0 277 26.4
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 9.7e-11 71.6 271 27.7
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.3e-10 71.2 282 27.3
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 1.3e-10 71.2 251 31.9
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.8e-10 70.1 255 29.8
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 8.2e-10 68.6 275 29.8
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.4e-09 67.8 244 31.6
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 1.8e-09 67.4 95 41.1
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 3.1e-09 66.6 69 49.3
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 4.1e-09 66.2 103 42.7
BcaC03g13578 Brassica carinata HOM05D003715 ORTHO05D003958 5.3e-09 65.9 95 45.3
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 5.3e-09 65.9 263 26.6
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 5.3e-09 65.9 161 29.8
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 6.9e-09 65.5 171 33.9
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 9.1e-09 65.1 91 46.2
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 3.2e-06 56.6 148 29.1


User provided reference genes

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