Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34941H Brassica oleracea HOM05D004244 ORTHO05D004964 2.5e-46 188.3 91 100.0
C05p62860 Brassica napus HOM05D004244 ORTHO05D004964 3.1e-44 181.4 98 92.9
A05p43120 Brassica napus HOM05D004244 ORTHO05D004964 3.5e-32 141.4 79 86.1
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.7e-24 115.2 87 70.1
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 1.8e-23 112.5 86 70.9
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 1.8e-23 112.5 86 70.9
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 1.8e-23 112.5 86 70.9
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 3.0e-23 111.7 87 69.0
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 6.7e-23 110.5 85 68.2
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 1.1e-22 109.8 85 69.4
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 7.4e-22 107.1 87 66.7
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.6e-21 105.9 87 66.7
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 2.2e-21 105.5 87 66.7
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 6.3e-21 104.0 88 65.9
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 9.0e-20 100.1 88 61.4
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.1e-14 83.2 84 52.4
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 4.2e-09 64.7 102 41.2
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 5.5e-09 64.3 92 45.7
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 1.6e-08 62.8 88 40.9
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 2.1e-08 62.4 93 40.9
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 2.7e-08 62.0 89 39.3
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 6.1e-08 60.8 94 39.4
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.8e-07 59.3 112 35.7
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 2.3e-07 58.9 89 38.2
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 2.3e-07 58.9 86 36.0
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 2.3e-07 58.9 103 35.9
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 2.3e-07 58.9 91 42.9
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 3.0e-07 58.5 93 37.6
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 3.0e-07 58.5 85 38.8
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 3.0e-07 58.5 96 34.4
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 3.0e-07 58.5 96 34.4
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.1e-07 57.8 91 40.7
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 5.1e-07 57.8 96 35.4
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 6.7e-07 57.4 95 41.1
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 6.7e-07 57.4 96 35.4
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 6.7e-07 57.4 85 38.8
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 6.7e-07 57.4 110 32.7
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 6.7e-07 57.4 81 40.7
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 8.8e-07 57.0 87 37.9
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 8.8e-07 57.0 96 38.5
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 8.8e-07 57.0 103 36.9
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.1e-06 56.6 93 39.8
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.1e-06 56.6 93 39.8
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 1.5e-06 56.2 87 36.8
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.5e-06 56.2 83 39.8
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 1.5e-06 56.2 91 41.8
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.5e-06 56.2 103 34.0
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.0e-06 55.8 83 41.0
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 2.6e-06 55.5 96 33.3
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.6e-06 55.5 84 41.7
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 2.6e-06 55.5 86 37.2
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 3.3e-06 55.1 94 37.2
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.3e-06 55.1 93 38.7
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 3.3e-06 55.1 84 41.7
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 3.3e-06 55.1 103 35.9
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 4.4e-06 54.7 111 30.6
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 4.4e-06 54.7 89 34.8
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 4.4e-06 54.7 108 36.1
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 4.4e-06 54.7 87 39.1
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 5.7e-06 54.3 88 38.6
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 7.4e-06 53.9 92 35.9
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 7.4e-06 53.9 87 40.2
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 9.7e-06 53.5 88 38.6
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 9.7e-06 53.5 91 38.5
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 9.7e-06 53.5 88 38.6
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 9.7e-06 53.5 88 38.6


User provided reference genes

Program Settings