Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 1.5e-88 331.3 162 100.0
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 3.7e-87 326.6 162 98.1
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 1.2e-80 305.1 164 93.9
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 1.2e-80 305.1 164 93.9
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 1.6e-58 231.5 180 70.0
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 1.5e-51 208.4 180 60.6
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 5.3e-49 199.9 186 62.9
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 1.2e-48 198.7 183 61.2
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 6.5e-47 193.0 194 59.3
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 1.0e-44 185.7 190 57.9
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 1.4e-41 175.3 190 55.8
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 1.2e-40 172.2 173 50.9
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 7.7e-40 169.5 170 51.2
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 2.9e-39 167.5 169 52.1
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 4.2e-38 163.7 170 48.2
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 4.2e-38 163.7 170 48.2
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 9.4e-38 162.5 151 52.3
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 2.1e-37 161.4 173 47.4
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 3.9e-36 157.1 116 62.9
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 6.7e-36 156.4 139 54.7
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.1e-35 155.6 98 71.4
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 7.4e-35 152.9 152 50.0
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 2.8e-34 151.0 128 56.2
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 4.8e-34 150.2 152 53.3
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 4.8e-34 150.2 169 47.3
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 1.1e-33 149.1 152 49.3
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.8e-33 148.3 116 56.9
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 4.1e-33 147.1 141 51.1
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 6.9e-33 146.4 119 59.7
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.6e-32 144.4 148 50.7
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.6e-32 144.4 148 50.7
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 3.4e-32 144.1 136 56.6
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 3.4e-32 144.1 104 61.5
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.5e-32 143.7 148 50.0
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 7.7e-32 142.9 173 43.4
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 1.0e-31 142.5 170 44.7
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.7e-31 141.7 96 67.7
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 2.9e-31 141.0 112 58.0
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 5.0e-31 140.2 162 45.7
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 5.0e-31 140.2 166 45.2
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 8.5e-31 139.4 133 54.1
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 1.1e-30 139.0 172 45.3
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 1.4e-30 138.7 123 54.5
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 1.4e-30 138.7 102 59.8
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 2.5e-30 137.9 122 54.9
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 3.2e-30 137.5 147 46.3
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 9.4e-30 136.0 157 47.1
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 2.7e-29 134.4 160 45.6
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 3.6e-29 134.0 152 44.7
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 1.4e-28 132.1 172 40.7
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 5.2e-28 130.2 146 44.5
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 2.8e-26 124.4 133 46.6
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 2.8e-26 124.4 141 44.7
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 4.8e-26 123.6 169 41.4
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 4.1e-25 120.6 168 38.1
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 4.1e-25 120.6 117 51.3
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 5.3e-25 120.2 215 35.8
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 4.5e-24 117.1 98 62.2
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 7.7e-24 116.3 167 42.5
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 1.7e-23 115.2 76 68.4
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-23 115.2 116 47.4
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 6.5e-23 113.2 116 46.6
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.5e-23 113.2 116 46.6
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.5e-23 113.2 116 46.6
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 2.5e-22 111.3 116 46.6
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 5.5e-22 110.2 119 48.7
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 7.2e-22 109.8 141 42.6
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 7.2e-22 109.8 176 38.1
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 9.4e-22 109.4 174 37.9
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 2.7e-21 107.8 176 38.6
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 4.7e-21 107.1 174 38.5
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 4.7e-21 107.1 152 38.8
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 6.1e-21 106.7 164 38.4
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 5.2e-20 103.6 170 37.1
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.0e-19 101.7 168 36.9
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 1.3e-18 99.0 95 48.4
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 1.7e-18 98.6 76 55.3
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 4.8e-18 97.1 132 42.4
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 6.3e-18 96.7 138 41.3
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 5.3e-17 93.6 68 63.2
Thhalv10022408m.g Eutrema salsugineum HOM05D007620 ORTHO05D009568 7.0e-17 93.2 44 97.7
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 7.0e-17 93.2 74 55.4
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 9.1e-17 92.8 122 39.3
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 2.0e-16 91.7 139 38.1
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 2.0e-16 91.7 153 34.6
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 3.5e-16 90.9 148 34.5
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 5.0e-15 87.0 136 37.5
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.9e-14 85.1 136 36.0
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 9.4e-14 82.8 134 35.1
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 2.1e-13 81.6 215 29.8
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 2.1e-13 81.6 76 53.9
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 4.7e-13 80.5 151 33.8
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 8.0e-13 79.7 79 51.9
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 6.8e-12 76.6 93 39.8
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.0e-11 75.1 131 38.2
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 3.4e-11 74.3 43 72.1
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 9.8e-11 72.8 43 67.4
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.3e-10 72.4 86 46.5
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.3e-10 72.4 86 46.5
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 1.3e-10 72.4 43 72.1
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 6.3e-10 70.1 85 47.1
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 9.1e-09 66.2 48 68.8
FAN18G1084 Fragaria x ananassa HOM05D002453 ORTHO05D008746 5.9e-08 63.5 81 38.3
FAN18G1604 Fragaria x ananassa HOM05D002453 ORTHO05D008746 5.9e-08 63.5 81 38.3
Zm00001eb151420 Zea mays HOM05D037632 ORTHO05D009568 1.3e-07 62.4 67 41.8
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 2.3e-07 61.6 85 40.0
CDE12G0214 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 5.0e-07 60.5 89 33.7
BcaC08g47471 Brassica carinata HOM05D006918 ORTHO05D008525 8.6e-07 59.7 87 39.1
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 8.6e-07 59.7 87 39.1
BolC6t40313H Brassica oleracea HOM05D006918 ORTHO05D008525 8.6e-07 59.7 87 39.1
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 8.6e-07 59.7 87 39.1
CDE07G0667 Ceratophyllum demersum HOM05D001587 ORTHO05D002654 1.5e-06 58.9 104 35.6
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 1.9e-06 58.5 93 35.5
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.5e-06 58.2 87 37.9
Hma1.2p1_1572F.1_g291500 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 3.2e-06 57.8 96 31.2
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 3.2e-06 57.8 89 32.6
BcaB05g22690 Brassica carinata HOM05D000162 ORTHO05D000003 5.5e-06 57.0 84 36.9
C06p52950 Brassica napus HOM05D006918 ORTHO05D008525 5.5e-06 57.0 88 37.5
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 5.5e-06 57.0 98 29.6
FvH4_5g12530 Fragaria vesca HOM05D002453 ORTHO05D008746 7.2e-06 56.6 81 37.0
Thecc.04G235900 Theobroma cacao HOM05D000424 ORTHO05D000355 7.2e-06 56.6 96 30.2
Manes.03G175400 Manihot esculenta HOM05D000424 ORTHO05D000355 9.5e-06 56.2 96 29.2
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 9.5e-06 56.2 96 30.2


User provided reference genes

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