Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 2.0e-201 705.7 378 100.0
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 1.4e-199 699.5 378 98.7
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 1.5e-193 679.5 380 95.8
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 1.2e-182 643.3 397 89.7
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 4.5e-182 641.3 397 89.4
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.7e-168 596.3 393 83.7
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 9.5e-164 580.5 398 79.1
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 6.6e-157 557.8 396 77.3
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 3.6e-155 552.0 392 70.9
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 5.8e-153 544.7 381 76.9
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 4.1e-151 538.5 381 71.4
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 1.6e-150 536.6 381 71.4
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 2.0e-150 536.2 381 71.1
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 2.7e-150 535.8 383 76.0
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 3.5e-150 535.4 381 70.9
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 3.5e-150 535.4 381 70.9
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 2.3e-149 532.7 377 76.4
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 4.7e-147 525.0 381 71.1
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.4e-146 523.5 379 73.6
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 3.5e-142 508.8 382 72.5
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 9.5e-140 500.7 372 68.8
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 8.1e-139 497.7 394 62.9
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 1.1e-138 497.3 394 62.9
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 1.1e-138 497.3 382 65.2
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 6.8e-138 494.6 381 66.4
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 9.9e-137 490.7 381 65.9
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 2.9e-136 489.2 382 69.9
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 5.4e-135 485.0 391 63.4
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 7.1e-135 484.6 381 64.0
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 9.2e-135 484.2 382 63.6
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 4.6e-134 481.9 391 63.2
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 3.9e-133 478.8 397 60.7
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 2.5e-132 476.1 385 63.6
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 1.2e-131 473.8 379 65.7
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 1.6e-131 473.4 382 67.8
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 1.6e-131 473.4 386 61.9
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 1.4e-130 470.3 381 63.5
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 1.4e-130 470.3 359 69.9
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 1.8e-130 469.9 381 61.4
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 3.1e-130 469.2 381 61.4
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 4.0e-130 468.8 381 63.3
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 5.2e-130 468.4 382 62.0
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 1.2e-129 467.2 382 61.8
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 1.5e-129 466.8 385 64.4
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 1.5e-129 466.8 381 61.4
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 2.0e-129 466.5 387 65.1
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 2.0e-129 466.5 382 61.8
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 2.6e-129 466.1 386 60.4
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 7.6e-129 464.5 409 58.9
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 9.9e-129 464.2 382 61.5
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 1.7e-128 463.4 380 60.5
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 3.8e-128 462.2 381 63.8
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 3.8e-128 462.2 382 61.3
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 3.8e-128 462.2 382 61.8
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 4.9e-128 461.8 394 65.7
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 4.9e-128 461.8 381 60.9
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 1.1e-127 460.7 381 60.6
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 3.2e-127 459.1 381 59.6
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 4.2e-127 458.8 381 66.1
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 5.4e-127 458.4 388 60.3
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 5.4e-127 458.4 429 61.8
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 1.2e-126 457.2 398 65.1
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 1.6e-126 456.8 382 62.6
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 2.7e-126 456.1 458 54.6
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 3.5e-126 455.7 393 59.5
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 6.0e-126 454.9 381 60.9
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 1.7e-125 453.4 381 59.1
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 5.1e-125 451.8 381 65.1
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 6.6e-125 451.4 383 59.3
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 1.5e-124 450.3 382 59.7
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 2.5e-124 449.5 383 58.5
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 3.3e-124 449.1 381 58.8
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 1.3e-123 447.2 395 58.5
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 1.6e-123 446.8 359 61.0
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 2.1e-123 446.4 381 60.1
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 4.8e-123 445.3 382 60.2
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 6.2e-123 444.9 382 58.9
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 1.4e-122 443.7 387 58.4
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 1.5e-121 440.3 382 59.9
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 6.4e-120 434.9 382 57.9
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 6.4e-120 434.9 337 64.1
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 2.1e-118 429.9 382 54.7
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 7.9e-118 427.9 385 56.1
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 7.9e-118 427.9 301 68.8
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 5.1e-117 425.2 314 79.3
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 5.6e-116 421.8 379 56.7
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 1.6e-115 420.2 313 79.2
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 2.1e-115 419.9 330 69.4
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 6.9e-114 414.8 316 77.2
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 2.9e-112 409.5 388 53.9
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 2.1e-107 393.3 389 54.8
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 1.4e-106 390.6 285 74.7
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 2.4e-106 389.8 301 65.4
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 4.0e-106 389.0 314 62.4
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 8.4e-104 381.3 363 55.4
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 8.4e-104 381.3 381 51.7
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 1.2e-102 377.5 383 52.2
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 2.1e-102 376.7 255 70.2
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 2.8e-99 366.3 376 51.9
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 6.3e-99 365.2 262 82.8
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 8.2e-99 364.8 382 56.3
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 1.1e-98 364.4 255 74.9
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 6.9e-98 361.7 255 74.9
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 9.0e-98 361.3 319 57.1
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 3.0e-93 346.3 470 44.0
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 1.6e-91 340.5 368 51.1
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 1.2e-89 334.3 330 59.1
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 3.7e-83 312.8 336 52.4
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 1.8e-82 310.5 275 57.8
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 8.8e-77 291.6 299 52.2
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 1.3e-75 287.7 390 43.6
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 8.2e-75 285.0 321 46.4
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 2.8e-67 260.0 208 62.0
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 2.8e-59 233.4 297 44.8
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 1.1e-55 221.5 311 47.3
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 1.1e-55 221.5 256 51.6
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 4.7e-54 216.1 294 48.6
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 1.5e-47 194.5 178 58.4
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 3.0e-45 186.8 206 42.2
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 6.8e-37 159.1 149 56.4
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 4.4e-36 156.4 110 70.9
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 1.1e-31 141.7 291 34.4
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 7.3e-31 139.0 83 83.1
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 9.5e-31 138.7 83 81.9
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 9.5e-31 138.7 83 81.9
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 3.6e-30 136.7 132 54.5
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 3.7e-27 126.7 146 47.9
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 3.2e-26 123.6 141 48.9
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 1.6e-25 121.3 142 48.6
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 2.7e-25 120.6 149 47.0
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 3.9e-24 116.7 81 63.0
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.9e-23 114.4 81 61.7
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 4.3e-23 113.2 282 27.7
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 9.5e-23 112.1 63 85.7
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 2.8e-22 110.5 89 64.0
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 8.4e-19 99.0 58 79.3
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 1.6e-17 94.7 383 25.6
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 3.5e-09 67.0 133 36.1
arahy.Tifrunner.gnm1.ann1.LT36IY Arachis hypogaea HOM05D010413 ORTHO05D014444 9.6e-07 58.9 42 52.4
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.3e-06 58.5 42 54.8
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 1.3e-06 58.5 42 54.8
arahy.Tifrunner.gnm1.ann1.J0URVC Arachis hypogaea HOM05D010413 ORTHO05D014444 1.3e-06 58.5 41 56.1
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.1e-06 57.8 41 56.1
arahy.Tifrunner.gnm1.ann1.M9QEPL Arachis hypogaea HOM05D010413 ORTHO05D002299 3.6e-06 57.0 42 52.4


User provided reference genes

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