Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 1.0e-260 902.9 456 100.0
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 1.9e-243 845.5 456 95.0
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 2.0e-240 835.5 457 93.9
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 1.6e-234 815.8 481 88.1
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 4.9e-231 804.3 456 91.0
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 9.8e-224 780.0 456 88.2
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.1e-217 760.0 457 84.7
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 1.2e-216 756.5 456 84.6
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 2.9e-215 751.9 458 84.5
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 1.9e-187 659.4 513 70.0
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 4.8e-186 654.8 466 73.8
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 1.4e-185 653.3 369 91.3
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.1e-155 553.9 468 63.2
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 2.0e-155 553.1 462 63.2
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 2.6e-155 552.7 467 63.4
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 1.4e-153 547.0 470 62.8
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 1.8e-153 546.6 469 61.4
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 4.1e-153 545.4 474 62.4
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 5.3e-153 545.0 463 62.0
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 6.9e-153 544.7 468 63.2
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 2.6e-152 542.7 468 61.8
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 4.5e-152 542.0 469 63.8
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 1.3e-151 540.4 471 62.4
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 1.7e-151 540.0 465 61.7
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 2.5e-150 536.2 445 62.7
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 5.5e-150 535.0 470 60.4
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 5.5e-150 535.0 472 60.6
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 9.4e-150 534.3 503 57.7
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 9.7e-147 524.2 465 59.1
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 4.8e-146 521.9 467 61.5
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 8.2e-146 521.2 468 60.9
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.4e-145 520.4 467 60.6
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 4.1e-145 518.8 484 57.4
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 7.0e-145 518.1 469 59.7
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 2.6e-144 516.2 449 61.9
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 7.7e-144 514.6 472 59.1
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 2.2e-143 513.1 467 61.5
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 2.9e-143 512.7 467 59.1
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.8e-143 512.3 469 59.9
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 5.0e-143 511.9 465 60.2
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 6.5e-143 511.5 449 61.7
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 6.5e-143 511.5 474 58.9
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 3.2e-142 509.2 467 59.3
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 4.7e-141 505.4 411 65.2
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 8.0e-141 504.6 354 70.3
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 1.0e-140 504.2 469 58.8
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 1.4e-140 503.8 463 57.7
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 2.3e-140 503.1 466 57.7
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 4.0e-140 502.3 469 59.1
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 6.7e-140 501.5 466 58.2
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 6.7e-140 501.5 468 58.1
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.2e-139 500.7 469 59.1
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 4.4e-139 498.8 464 59.5
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 4.4e-139 498.8 492 56.5
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 7.5e-139 498.0 467 58.7
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 3.7e-138 495.7 470 58.5
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 6.3e-138 495.0 469 57.6
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 1.1e-137 494.2 465 59.1
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.4e-137 493.8 355 68.5
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 4.1e-137 492.3 468 58.3
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 7.0e-137 491.5 463 56.8
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 4.5e-136 488.8 470 58.5
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 1.3e-135 487.3 472 57.8
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.1e-134 484.2 469 57.1
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.5e-134 483.8 271 89.3
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 1.5e-134 483.8 473 56.4
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 6.1e-133 478.4 464 57.1
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 1.8e-132 476.9 407 62.9
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 1.8e-132 476.9 472 56.1
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 2.3e-132 476.5 471 55.8
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 4.0e-132 475.7 403 63.3
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 2.6e-131 473.0 470 54.7
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 5.7e-131 471.9 457 55.1
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 5.7e-131 471.9 428 58.4
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 7.5e-131 471.5 457 55.1
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 1.3e-130 470.7 457 54.9
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 3.7e-130 469.2 354 66.1
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 8.3e-130 468.0 473 55.2
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 1.1e-129 467.6 460 54.3
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 5.4e-129 465.3 473 54.5
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 1.2e-128 464.2 467 55.2
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 2.0e-128 463.4 424 59.2
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 2.7e-128 463.0 458 54.8
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.0e-127 461.1 416 59.6
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 5.5e-126 455.3 494 52.6
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.8e-125 453.0 412 59.7
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 8.0e-125 451.4 474 53.8
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 3.0e-124 449.5 355 62.8
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 1.8e-121 440.3 246 90.7
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.8e-121 440.3 353 64.3
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 6.6e-119 431.8 473 51.8
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 1.9e-118 430.3 485 50.5
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 5.6e-118 428.7 473 51.4
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 1.2e-115 421.0 466 50.0
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 7.5e-115 418.3 388 59.8
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.2e-112 411.0 409 55.3
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 6.0e-112 408.7 312 66.7
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 5.2e-108 395.6 356 57.6
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 9.8e-107 391.3 271 69.7
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 1.6e-104 384.0 490 46.7
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 6.0e-104 382.1 412 52.7
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.4e-100 370.9 269 65.8
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 3.3e-94 349.7 468 45.9
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 3.6e-93 346.3 382 50.3
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.8e-90 336.3 291 58.4
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 3.2e-89 333.2 404 44.3
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.2e-88 331.3 305 56.1
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.6e-88 330.9 385 47.0
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 6.6e-87 325.5 428 43.5
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 3.3e-86 323.2 359 47.6
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.2e-85 321.2 348 52.0
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 4.2e-81 306.2 309 55.3
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 6.6e-79 298.9 318 51.3
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 1.1e-76 291.6 407 44.7
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 4.5e-75 286.2 186 80.6
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.1e-64 250.8 314 48.1
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.1e-63 246.1 469 38.8
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.8e-58 229.9 458 38.4
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 4.5e-51 206.5 164 62.8
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 4.2e-49 199.9 293 45.1
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 3.6e-48 196.8 250 47.2
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 2.5e-33 147.5 193 51.3
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 8.2e-29 132.5 351 29.1
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 3.5e-27 127.1 109 57.8
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.7e-26 124.8 128 54.7
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 1.6e-24 118.2 138 47.8
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 8.8e-23 112.5 133 56.4
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.0e-22 111.3 60 76.7
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.7e-22 109.8 124 46.8
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 2.8e-21 107.5 193 35.8
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 3.0e-15 87.4 73 60.3
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 9.1e-12 75.9 208 34.6
C03p41530 Brassica napus HOM05D033945 ORTHO05D033616 3.0e-07 60.8 47 66.0
BolC3t16434H Brassica oleracea HOM05D033945 ORTHO05D033616 3.0e-07 60.8 47 66.0


User provided reference genes

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