Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 3.0e-52 208.4 116 100.0
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 3.0e-52 208.4 116 100.0
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 3.0e-52 208.4 116 100.0
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 3.0e-52 208.4 116 100.0
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 6.3e-50 200.7 116 96.6
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 6.3e-50 200.7 116 94.8
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 4.1e-49 198.0 116 94.0
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 4.1e-49 198.0 116 94.0
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 6.9e-49 197.2 116 94.8
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 5.9e-48 194.1 117 94.9
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 7.7e-48 193.7 116 94.0
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 1.0e-47 193.4 116 92.2
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 2.2e-47 192.2 116 91.4
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 8.5e-47 190.3 116 89.7
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 2.5e-46 188.7 116 90.5
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 3.2e-46 188.3 115 88.7
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 3.2e-46 188.3 116 89.7
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 3.6e-37 158.3 110 81.8
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 3.6e-37 158.3 110 81.8
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.7e-37 157.9 110 80.9
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.7e-37 157.9 110 80.9
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.7e-37 157.9 110 80.9
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 4.7e-37 157.9 110 79.1
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 4.7e-37 157.9 110 79.1
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 4.7e-37 157.9 110 78.2
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 1.0e-36 156.8 110 80.9
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 1.4e-36 156.4 110 80.9
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 1.4e-36 156.4 110 79.1
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 1.8e-36 156.0 110 80.0
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 2.3e-36 155.6 110 80.9
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 2.3e-36 155.6 110 79.1
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 2.3e-36 155.6 110 80.0
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 3.9e-36 154.8 110 79.1
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 5.1e-36 154.5 110 80.0
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 6.7e-36 154.1 110 78.2
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 8.8e-36 153.7 110 77.3
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 1.1e-35 153.3 110 78.2
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 1.5e-35 152.9 110 79.1
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 1.5e-35 152.9 111 77.5
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 1.5e-35 152.9 111 77.5
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.5e-35 152.9 111 78.4
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 2.0e-35 152.5 110 79.1
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 2.0e-35 152.5 110 79.1
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 2.0e-35 152.5 110 79.1
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 2.6e-35 152.1 110 78.2
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 2.6e-35 152.1 110 76.4
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 2.6e-35 152.1 110 80.0
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 3.3e-35 151.8 110 76.4
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 3.3e-35 151.8 110 78.2
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 4.4e-35 151.4 110 79.1
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 5.7e-35 151.0 110 79.1
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 9.7e-35 150.2 110 77.3
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 9.7e-35 150.2 110 78.2
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 9.7e-35 150.2 106 79.2
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 1.3e-34 149.8 110 76.4
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 1.3e-34 149.8 110 76.4
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 1.3e-34 149.8 110 76.4
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 1.3e-34 149.8 110 76.4
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 1.7e-34 149.4 107 77.6
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 1.7e-34 149.4 110 78.2
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.2e-34 149.1 107 76.6
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 2.2e-34 149.1 107 76.6
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.8e-34 148.7 110 74.5
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 2.8e-34 148.7 108 75.9
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.8e-34 148.7 107 76.6
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 2.8e-34 148.7 110 77.3
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 2.8e-34 148.7 110 78.2
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 3.7e-34 148.3 110 77.3
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 3.7e-34 148.3 101 79.2
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 4.8e-34 147.9 116 76.7
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 4.8e-34 147.9 110 74.5
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.8e-34 147.9 107 76.6
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 4.8e-34 147.9 107 76.6
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 4.8e-34 147.9 110 74.5
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 6.3e-34 147.5 110 76.4
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 8.2e-34 147.1 110 76.4
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 8.2e-34 147.1 111 74.8
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 1.1e-33 146.7 110 76.4
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.1e-33 146.7 110 76.4
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.1e-33 146.7 110 76.4
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 1.1e-33 146.7 110 76.4
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.1e-33 146.7 110 73.6
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 1.4e-33 146.4 107 77.6
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 1.4e-33 146.4 107 77.6
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.4e-33 146.4 110 77.3
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.8e-33 146.0 111 76.6
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 1.8e-33 146.0 105 77.1
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.8e-33 146.0 108 76.9
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.8e-33 146.0 110 73.6
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 2.4e-33 145.6 107 74.8
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 5.3e-33 144.4 111 74.8
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 5.3e-33 144.4 108 75.0
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 7.0e-33 144.1 111 73.0
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 7.0e-33 144.1 110 72.7
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 7.0e-33 144.1 110 74.5
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 9.1e-33 143.7 110 74.5
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 9.1e-33 143.7 110 74.5
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 9.1e-33 143.7 98 79.6
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 1.5e-32 142.9 110 74.5
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.0e-32 142.5 110 76.4
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.0e-32 142.5 110 76.4
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 2.6e-32 142.1 110 71.8
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 2.6e-32 142.1 110 71.8
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 2.6e-32 142.1 105 75.2
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 6.5e-31 137.5 97 79.4
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 8.5e-31 137.1 132 64.4
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 1.5e-30 136.3 123 67.5
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.9e-30 136.0 110 70.9
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 2.5e-30 135.6 107 72.0
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 3.2e-30 135.2 110 73.6
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 5.5e-30 134.4 107 71.0
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 7.2e-30 134.0 106 70.8
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 7.2e-30 134.0 110 71.8
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 1.6e-29 132.9 110 70.0
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.7e-29 132.1 100 76.0
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 8.0e-29 130.6 111 69.4
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 1.1e-27 126.7 110 62.7
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 3.3e-27 125.2 98 67.3
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 4.4e-27 124.8 110 66.4
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 4.4e-27 124.8 113 69.0
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 7.4e-27 124.0 110 65.5
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 7.4e-27 124.0 111 65.8
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 7.4e-27 124.0 110 63.6
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 9.7e-27 123.6 111 66.7
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 2.2e-26 122.5 100 67.0
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 3.7e-26 121.7 107 64.5
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.4e-25 119.8 94 71.3
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.6e-24 115.5 180 47.2
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.5e-24 114.8 111 64.0
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 1.0e-23 113.6 111 60.4
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 1.3e-23 113.2 84 78.6
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.2e-22 108.6 111 62.2
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 3.4e-19 98.6 109 60.6
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.3e-18 96.7 62 85.5
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 8.3e-18 94.0 72 75.0
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 1.5e-14 83.2 60 78.3
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 4.2e-14 81.6 63 77.8
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 3.6e-13 78.6 88 56.8
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 1.8e-12 76.3 71 64.8
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 2.3e-12 75.9 49 77.6
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 4.0e-12 75.1 67 67.2
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.2e-11 73.6 48 77.1
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 2.6e-11 72.4 59 69.5
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 1.3e-10 70.1 53 73.6


User provided reference genes

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