Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p60530 Brassica napus HOM05D007152 ORTHO05D008912 2.5e-94 349.0 201 100.0
BolC5t34707H Brassica oleracea HOM05D007152 ORTHO05D008912 2.5e-94 349.0 201 100.0
A05p41300 Brassica napus HOM05D007152 ORTHO05D008912 4.0e-76 288.5 200 90.0
BraA05t22853Z Brassica rapa HOM05D007152 ORTHO05D008912 2.0e-75 286.2 200 89.5
Thhalv10022432m.g Eutrema salsugineum HOM05D007152 ORTHO05D008912 2.5e-70 269.2 205 83.9
CARHR081420 Cardamine hirsuta HOM05D007152 ORTHO05D008912 1.2e-69 266.9 205 79.5
Sp3g05760 Schrenkiella parvula HOM05D007152 ORTHO05D008912 4.4e-67 258.5 205 82.0
Carub.0003s0633 Capsella rubella HOM05D007152 ORTHO05D008912 5.0e-63 245.0 207 72.9
Aa31LG5G17390 Aethionema arabicum HOM05D007152 ORTHO05D008912 2.3e-60 236.1 204 75.5
BolC3t16516H Brassica oleracea HOM05D007152 ORTHO05D008912 1.7e-58 229.9 200 72.5
AT3G06780 Arabidopsis thaliana HOM05D007152 ORTHO05D008912 2.2e-58 229.6 206 71.8
AL3G17910 Arabidopsis lyrata HOM05D007152 ORTHO05D008912 1.0e-55 220.7 207 69.6
BraA01t04415Z Brassica rapa HOM05D007152 ORTHO05D008912 1.7e-55 219.9 201 72.1
BNapus_Darmor_BZH_scaffold_117p00080 Brassica napus HOM05D007152 ORTHO05D008912 2.9e-55 219.2 202 70.3
C03p42450 Brassica napus HOM05D007152 ORTHO05D008912 3.6e-53 212.2 200 70.0
THA.LOC104818902 Tarenaya hassleriana HOM05D007152 ORTHO05D008912 6.8e-52 208.0 204 60.8
A03p34880 Brassica napus HOM05D007152 ORTHO05D008912 2.0e-51 206.5 200 69.0
GSVIVG01035097001 Vitis vinifera HOM05D007152 ORTHO05D008912 5.1e-31 138.7 206 51.0
Thecc.04G290300 Theobroma cacao HOM05D007152 ORTHO05D008912 6.2e-29 131.7 215 42.3
Gohir.D10G173100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 1.1e-28 131.0 213 47.9
Hma1.2p1_1352F.1_g277500 Hydrangea macrophylla HOM05D007152 ORTHO05D008912 1.4e-28 130.6 203 46.8
Gorai.011G193700 Gossypium raimondii HOM05D007152 ORTHO05D008912 3.1e-28 129.4 213 48.4
TAR362G0707 Trochodendron aralioides HOM05D007152 ORTHO05D008912 2.0e-27 126.7 207 47.3
Dinv44343 Davidia involucrata HOM05D007152 ORTHO05D008912 4.4e-27 125.6 190 50.0
Gohir.A10G167100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 2.2e-26 123.2 213 47.9
MELO3C021305.2 Cucumis melo HOM05D007152 ORTHO05D008912 3.8e-26 122.5 213 46.5
Haze_01149 Corylus avellana HOM05D007152 ORTHO05D008912 1.1e-25 120.9 224 41.1
Duzib151G0510 Durio zibethinus HOM05D007152 ORTHO05D008912 1.4e-25 120.6 210 46.2
CANSAT78G0935 Cannabis sativa HOM05D007152 ORTHO05D008912 2.1e-24 116.7 211 46.0
PGSC0003DMG400017287 Solanum tuberosum HOM05D007152 ORTHO05D008912 2.1e-24 116.7 207 44.4
QL06p010801 Quercus lobata HOM05D007152 ORTHO05D008912 3.5e-24 115.9 206 41.7
COL.COLO4_13806 Corchorus olitorius HOM05D007152 ORTHO05D008912 4.6e-24 115.5 209 37.8
Nitab4.5_0007965g0010 Nicotiana tabacum HOM05D007152 ORTHO05D008912 4.6e-24 115.5 193 44.0
ClCG06G004920 Citrullus lanatus HOM05D007152 ORTHO05D008912 6.0e-24 115.2 212 44.8
Prupe.1G130200 Prunus persica HOM05D007152 ORTHO05D008912 1.7e-23 113.6 205 44.9
Cfa015435 Carpinus fangiana HOM05D007152 ORTHO05D008912 3.9e-23 112.5 207 49.8
Sopen07g029030 Solanum pennellii HOM05D007152 ORTHO05D008912 8.7e-23 111.3 203 48.8
Nn6g34202 Nelumbo nucifera HOM05D007152 ORTHO05D008912 1.1e-22 110.9 207 44.4
TWI73G1002 Tripterygium wilfordii HOM05D007152 ORTHO05D008912 2.5e-22 109.8 190 48.4
Peaxi162Scf00065g10111 Petunia axillaris HOM05D007152 ORTHO05D008912 5.6e-22 108.6 216 46.8
Glyma.07G244800 Glycine max HOM05D007152 ORTHO05D008912 1.2e-21 107.5 151 53.0
CsaV3_6G022730 Cucumis sativus L. HOM05D007152 ORTHO05D008912 3.6e-21 105.9 181 46.4
RcHm_v2.0_Chr4g0423591 Rosa chinensis HOM05D007152 ORTHO05D008912 1.8e-20 103.6 204 42.2
Duzib212G0417 Durio zibethinus HOM05D007152 ORTHO05D008912 2.4e-20 103.2 221 39.8
MD16G1162700 Malus domestica HOM05D007152 ORTHO05D008912 3.1e-20 102.8 205 41.5
Migut.G00124 Erythranthe guttata HOM05D007152 ORTHO05D008912 5.3e-20 102.1 205 39.5
FvH4_4g18790 Fragaria vesca HOM05D007152 ORTHO05D008912 6.9e-20 101.7 205 41.0
FAN12G2857 Fragaria x ananassa HOM05D007152 ORTHO05D008912 6.9e-20 101.7 205 41.0
FAN12G4239 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.5e-19 100.5 205 40.5
CiPaw.01G144800 Carya illinoinensis HOM05D007152 ORTHO05D008912 2.0e-19 100.1 208 44.2
Migut.G00085 Erythranthe guttata HOM05D007152 ORTHO05D008912 2.6e-19 99.8 209 40.7
SalBow2G3473 Salvia bowleyana HOM05D007152 ORTHO05D008912 9.9e-19 97.8 208 37.0
Solyc07g055660.2 Solanum lycopersicum HOM05D007152 ORTHO05D008912 9.9e-19 97.8 201 36.8
VMungo1215G1115 Vigna mungo HOM05D007152 ORTHO05D008912 1.3e-18 97.4 211 40.3
PGR004G0508 Punica granatum HOM05D007152 ORTHO05D008912 2.2e-18 96.7 213 41.3
Nitab4.5_0000306g0360 Nicotiana tabacum HOM05D007152 ORTHO05D008912 3.8e-18 95.9 191 46.6
Glyma.17G029000 Glycine max HOM05D007152 ORTHO05D008912 6.4e-18 95.1 150 46.0
Cc03_g01440 Coffea canephora HOM05D007152 ORTHO05D008912 8.4e-18 94.7 208 39.4
Actinidia14275 Actinidia chinensis HOM05D007152 ORTHO05D008912 1.1e-17 94.4 198 40.9
MBI18_g04558_MAGBIO Magnolia biondii HOM05D000387 ORTHO05D008912 1.1e-17 94.4 204 36.3
DCAR_027047 Daucus carota HOM05D007152 ORTHO05D008912 2.4e-17 93.2 156 50.6
ECA246G2204 Erigeron canadensis HOM05D007152 ORTHO05D008912 1.2e-16 90.9 149 45.6
FAN07G1963 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.2e-16 90.9 204 40.2
Phvul.003G108000 Phaseolus vulgaris HOM05D007152 ORTHO05D008912 1.6e-16 90.5 210 38.6
Lsat_1_v5_gn_3_21801 Lactuca sativa HOM05D007152 ORTHO05D008912 2.1e-16 90.1 208 39.9
FAN17G1647 Fragaria x ananassa HOM05D007152 ORTHO05D008912 3.5e-16 89.4 203 39.4
Manes.03G199400 Manihot esculenta HOM05D007152 ORTHO05D008912 7.8e-16 88.2 208 35.6
CSS0046950 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 1.7e-15 87.0 205 39.5
Lalb_Chr12g0201151 Lupinus albus HOM05D007152 ORTHO05D008912 1.7e-15 87.0 198 44.4
EL10Ac3g06653 Beta vulgaris HOM05D007152 ORTHO05D008912 2.3e-15 86.7 170 49.4
PSO407G0318 Papaver somniferum HOM05D007152 ORTHO05D008912 2.3e-15 86.7 209 45.5
Lj4g0009216 Lotus japonicus HOM05D007152 ORTHO05D008912 5.1e-15 85.5 166 44.6
Lalb_Chr20g0121161 Lupinus albus HOM05D007152 ORTHO05D008912 5.1e-15 85.5 145 44.8
CSS0044056 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 6.6e-15 85.1 205 39.0
Eucgr.H03966 Eucalyptus grandis HOM05D007152 ORTHO05D008912 8.7e-15 84.7 216 40.7
Aqoxy2G02883 Aquilegia oxysepala HOM05D007152 ORTHO05D008912 3.3e-14 82.8 212 40.6
SGA_v2.0_scaffold18G08363 Striga asiatica HOM05D007152 ORTHO05D008912 3.6e-13 79.3 206 36.9
Potri.008G211000 Populus trichocarpa HOM05D007152 ORTHO05D008912 4.8e-13 79.0 209 45.5
Sed0011406 Sechium edule HOM05D007152 ORTHO05D008912 6.2e-13 78.6 208 37.0
Eucgr.B01571 Eucalyptus grandis HOM05D007152 ORTHO05D008912 1.1e-12 77.8 184 41.8
Atru.chr4.2916 Acer truncatum HOM05D007152 ORTHO05D008912 1.4e-12 77.4 166 36.1
Ca_21475_v3 Cicer arietinum L. HOM05D007152 ORTHO05D008912 1.4e-12 77.4 151 39.7
ECA240G1188 Erigeron canadensis HOM05D007152 ORTHO05D008912 1.8e-12 77.0 133 39.8
CiPaw.02G079300 Carya illinoinensis HOM05D007152 ORTHO05D008912 3.1e-12 76.3 213 37.1
Nn2g11629 Nelumbo nucifera HOM05D000191 ORTHO05D000122 3.1e-12 76.3 190 34.7
Ah.04g153700 Amaranthus hybridus HOM05D007152 ORTHO05D008912 9.0e-12 74.7 143 40.6
AUR62018060 Chenopodium quinoa HOM05D007152 ORTHO05D008912 3.4e-11 72.8 60 60.0
Lsat_1_v5_gn_6_76040 Lactuca sativa HOM05D007152 ORTHO05D008912 1.7e-10 70.5 189 41.3
Ciclev10006039m.g Citrus clementina HOM05D007152 ORTHO05D008912 2.2e-10 70.1 154 37.7
HanXRQChr07g0199211 Helianthus annuus HOM05D007152 ORTHO05D008912 3.8e-10 69.3 194 38.1
Nn4g25735 Nelumbo nucifera HOM05D007152 ORTHO05D008912 3.8e-10 69.3 165 40.0
Sc13g0003130 Simmondsia chinensis HOM05D007152 ORTHO05D008912 8.4e-10 68.2 157 35.0
Medtr4g120400 Medicago truncatula HOM05D007152 ORTHO05D008912 1.1e-09 67.8 154 40.3
Actinidia13384 Actinidia chinensis HOM05D007152 ORTHO05D008912 1.4e-09 67.4 187 34.8
Manes.15G009801 Manihot esculenta HOM05D007152 ORTHO05D008912 3.2e-09 66.2 111 41.4
Sabra10G0005500 Salix brachista HOM05D007152 ORTHO05D008912 4.2e-09 65.9 66 60.6
Eucgr.G02139 Eucalyptus grandis HOM05D007152 ORTHO05D008912 9.3e-09 64.7 116 46.6
RcHm_v2.0_Chr7g0221621 Rosa chinensis HOM05D007152 ORTHO05D008912 9.3e-09 64.7 44 68.2
Sabra08G0151100 Salix brachista HOM05D007152 ORTHO05D008912 1.2e-08 64.3 47 68.1
Dinv28193 Davidia involucrata HOM05D007152 ORTHO05D008912 2.3e-07 60.1 30 76.7
Eucgr.G02132 Eucalyptus grandis HOM05D007152 ORTHO05D008912 8.7e-07 58.2 125 44.8
Potri.010G006600 Populus trichocarpa HOM05D007152 ORTHO05D008912 8.7e-07 58.2 213 37.1
TPR.G22774 Trifolium pratense HOM05D007152 ORTHO05D008912 4.3e-06 55.8 121 41.3


User provided reference genes

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