Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 0.0e+00 1204.1 600 100.0
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 0.0e+00 1198.0 600 99.5
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 0.0e+00 1179.9 600 98.0
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 0.0e+00 1149.0 604 94.9
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 0.0e+00 1147.9 604 95.0
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 0.0e+00 1085.1 602 91.5
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 2.9e-311 1071.2 606 89.1
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 1.4e-302 1042.3 606 86.8
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 4.5e-301 1037.3 606 86.3
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 6.1e-298 1026.9 606 85.1
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 2.8e-295 1018.1 606 84.5
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 1.1e-294 1016.1 606 84.5
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 5.0e-292 1007.3 582 86.4
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 4.1e-286 987.6 611 82.3
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 3.4e-272 941.4 607 78.1
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 2.8e-226 788.9 580 68.4
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.1e-214 750.4 611 64.8
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 1.1e-214 750.4 623 63.1
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 3.5e-213 745.3 612 64.1
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 2.3e-212 742.7 588 66.3
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 1.1e-211 740.3 579 64.6
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 9.6e-211 737.3 610 63.1
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 4.8e-210 734.9 579 66.7
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 1.4e-209 733.4 591 65.5
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 1.4e-209 733.4 581 65.6
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 6.9e-209 731.1 590 65.4
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 1.2e-208 730.3 599 64.3
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 2.0e-208 729.6 599 64.9
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 5.8e-208 728.0 613 63.1
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 1.9e-206 723.0 613 61.8
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 9.3e-206 720.7 614 62.7
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 9.3e-206 720.7 614 62.9
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 2.7e-205 719.2 609 60.9
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 2.7e-205 719.2 578 65.6
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 3.5e-205 718.8 619 63.0
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 7.9e-205 717.6 588 63.6
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 2.3e-204 716.1 594 62.6
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 5.1e-204 714.9 611 60.6
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 1.5e-203 713.4 587 62.5
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 2.5e-203 712.6 611 60.4
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 3.3e-203 712.2 593 61.4
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 4.3e-203 711.8 605 62.3
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 9.6e-203 710.7 605 62.1
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 2.1e-202 709.5 605 62.0
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 1.1e-201 707.2 614 62.1
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 1.4e-201 706.8 569 64.3
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 6.9e-201 704.5 605 61.0
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 3.4e-200 702.2 598 62.0
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 4.5e-200 701.8 608 60.9
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.8e-200 701.4 621 59.9
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 5.8e-200 701.4 607 61.8
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 7.6e-200 701.0 623 59.9
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 1.7e-199 699.9 621 59.7
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 1.7e-199 699.9 574 62.7
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 2.2e-199 699.5 580 64.0
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 2.9e-199 699.1 606 61.4
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 4.9e-199 698.4 580 64.3
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 8.4e-199 697.6 609 61.1
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 8.4e-199 697.6 604 61.6
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 2.7e-197 692.6 612 61.1
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 7.9e-197 691.0 617 59.6
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 1.0e-196 690.6 600 59.8
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 3.0e-196 689.1 606 61.4
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 3.0e-196 689.1 613 60.7
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 4.3e-195 685.3 595 60.2
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 5.3e-193 678.3 613 59.9
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 8.5e-191 671.0 593 57.5
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 8.5e-191 671.0 534 65.5
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 3.2e-190 669.1 610 57.5
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 1.2e-189 667.2 613 58.1
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 1.2e-189 667.2 580 60.3
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 4.6e-189 665.2 607 58.0
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 1.0e-188 664.1 583 59.0
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 8.8e-188 661.0 583 58.7
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 1.1e-187 660.6 553 61.7
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 9.7e-187 657.5 629 56.8
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 5.3e-185 651.7 574 60.8
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 9.1e-185 651.0 586 58.5
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 1.5e-184 650.2 589 57.2
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 2.6e-184 649.4 570 60.4
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 5.9e-184 648.3 596 57.0
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 2.9e-183 646.0 600 57.2
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 3.8e-183 645.6 613 56.9
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 2.5e-182 642.9 577 58.4
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.0e-179 633.3 634 55.0
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 4.4e-179 632.1 592 57.1
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 4.4e-179 632.1 528 64.0
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 1.1e-177 627.5 598 58.9
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.5e-176 623.6 597 55.6
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 3.5e-176 622.5 539 59.7
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 3.0e-172 609.4 542 60.3
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 4.4e-171 605.5 675 51.1
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 9.7e-171 604.4 584 55.1
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 6.3e-170 601.7 578 56.2
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 4.1e-169 599.0 587 55.0
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 4.5e-168 595.5 592 52.7
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 1.3e-167 594.0 591 54.1
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 1.5e-163 580.5 610 54.6
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 4.8e-162 575.5 607 51.9
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 6.3e-162 575.1 596 52.0
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 2.2e-159 566.6 582 55.0
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 2.2e-159 566.6 598 53.8
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 4.0e-156 555.8 591 52.1
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.6e-152 543.9 446 63.5
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 5.9e-152 542.0 546 55.3
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.5e-150 535.4 601 49.9
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 4.7e-149 532.3 343 75.5
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 5.9e-144 515.4 571 51.7
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 8.6e-143 511.5 545 52.1
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 2.5e-134 483.4 470 55.5
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 6.6e-127 458.8 597 43.9
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 1.6e-125 454.1 436 56.2
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 1.7e-114 417.5 614 39.9
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 6.9e-108 395.6 509 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 2.5e-102 377.1 568 39.3
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 1.5e-99 367.9 574 38.3
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.0e-91 340.9 342 55.0
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 7.4e-86 322.4 258 62.4
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.4e-84 318.2 388 47.9
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 1.9e-81 307.8 399 45.6
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 6.1e-72 276.2 224 62.9
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 3.0e-71 273.9 230 60.0
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 1.7e-66 258.1 448 34.2
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.0e-59 234.6 291 48.1
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 4.7e-56 223.4 187 60.4
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 3.9e-55 220.3 189 59.8
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 4.2e-33 147.1 202 46.0
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 1.6e-32 145.2 147 46.9
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 2.8e-32 144.4 222 47.3
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 4.6e-27 127.1 267 34.1
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 8.0e-24 116.3 328 29.0
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 3.7e-21 107.5 76 72.4
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 9.2e-20 102.8 473 23.0
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 2.7e-19 101.3 236 33.1
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 4.0e-15 87.4 150 35.3
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 2.9e-13 81.3 50 68.0
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.9e-12 78.6 57 68.4
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 9.5e-09 66.2 55 61.8


User provided reference genes

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