Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 0.0e+00 1204.5 642 100.0
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 2.3e-295 1018.5 549 100.0
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 7.4e-294 1013.4 549 99.6
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.0e-271 939.9 549 93.4
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 6.8e-271 937.2 549 93.1
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.4e-260 902.9 555 87.7
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 1.3e-237 826.6 563 81.5
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 4.1e-236 821.6 564 82.1
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 3.6e-232 808.5 562 80.4
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 4.4e-230 801.6 562 80.2
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 5.4e-228 794.7 562 79.5
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 2.1e-224 782.7 567 77.8
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 2.2e-205 719.5 562 74.4
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 5.5e-180 635.2 586 65.9
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.6e-179 632.5 571 65.0
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 1.9e-164 583.6 558 62.4
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 6.1e-163 578.6 571 62.0
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 6.8e-162 575.1 572 61.9
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.2e-161 574.3 572 61.9
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.5e-161 573.9 572 61.4
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 5.7e-161 572.0 571 61.8
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 1.1e-159 567.8 579 60.1
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 2.4e-159 566.6 572 59.6
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 3.1e-159 566.2 576 60.4
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 3.1e-159 566.2 576 60.4
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 5.4e-159 565.5 573 60.4
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 1.6e-158 563.9 575 59.3
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.5e-158 562.8 574 58.9
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 4.5e-158 562.4 574 59.8
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 7.7e-158 561.6 576 60.1
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 2.9e-157 559.7 577 59.6
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 8.5e-157 558.1 573 58.5
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 4.7e-155 552.4 585 59.3
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 1.0e-154 551.2 571 59.2
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 1.8e-154 550.4 576 58.0
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 3.0e-154 549.7 569 59.6
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 3.0e-154 549.7 571 60.6
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 5.2e-154 548.9 571 59.4
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 1.2e-153 547.7 572 60.5
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 7.5e-153 545.0 557 57.6
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 9.8e-153 544.7 575 57.6
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.3e-152 544.3 574 57.0
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 3.7e-152 542.7 559 57.4
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.1e-151 539.7 569 59.2
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 3.1e-151 539.7 569 59.2
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 4.5e-150 535.8 565 58.4
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 5.9e-150 535.4 577 56.8
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 9.5e-148 528.1 575 58.3
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 8.0e-147 525.0 566 56.9
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 8.0e-147 525.0 577 56.5
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 1.4e-146 524.2 559 55.6
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.8e-146 523.9 560 57.0
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.0e-146 523.1 577 55.6
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 3.0e-146 523.1 560 56.4
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 8.9e-146 521.5 557 57.5
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 1.2e-145 521.2 563 57.0
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.5e-145 520.8 646 52.0
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.0e-145 520.4 575 56.0
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 4.4e-145 519.2 576 55.4
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 4.4e-145 519.2 576 55.4
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 9.8e-145 518.1 581 55.8
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 8.3e-144 515.0 573 54.8
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 8.3e-144 515.0 567 56.8
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.1e-143 514.6 536 58.0
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 1.4e-143 514.2 545 56.9
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.8e-143 513.8 577 55.5
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 4.1e-143 512.7 580 57.1
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 5.4e-143 512.3 561 55.4
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 7.0e-143 511.9 580 57.2
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 9.2e-143 511.5 620 52.4
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 2.0e-142 510.4 566 56.9
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 2.7e-142 510.0 624 52.7
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 3.9e-141 506.1 578 54.2
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 6.6e-141 505.4 580 56.9
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 1.1e-140 504.6 583 55.4
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 1.5e-140 504.2 569 55.5
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 4.3e-140 502.7 547 57.4
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 1.6e-139 500.7 581 54.4
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 4.7e-139 499.2 557 53.9
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.1e-138 498.0 572 54.4
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.1e-138 498.0 559 56.2
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 2.3e-138 496.9 579 56.0
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 4.4e-137 492.7 572 53.7
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 5.8e-137 492.3 572 53.3
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 1.3e-136 491.1 567 55.4
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 1.4e-135 487.6 567 55.2
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 3.2e-135 486.5 560 53.0
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 3.5e-134 483.0 591 51.9
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 4.6e-134 482.6 573 54.1
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 7.8e-134 481.9 570 53.3
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.0e-133 481.5 591 52.1
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 3.0e-133 479.9 599 52.3
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 3.6e-131 473.0 576 51.9
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.4e-130 471.1 513 55.9
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 4.1e-127 459.5 547 51.6
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.1e-124 451.4 482 58.1
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.6e-123 446.4 711 44.7
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 1.8e-122 444.1 569 50.8
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 4.0e-122 443.0 509 56.0
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 8.9e-122 441.8 596 49.0
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.2e-121 441.4 561 50.8
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.6e-121 440.3 709 44.3
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 5.4e-119 432.6 657 47.0
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 8.1e-115 418.7 481 54.5
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 2.4e-114 417.2 465 56.8
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 7.8e-110 402.1 411 58.4
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 5.1e-109 399.4 583 46.7
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 5.1e-109 399.4 392 57.9
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 9.6e-108 395.2 556 47.1
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 1.6e-107 394.4 587 45.0
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.4e-98 364.8 559 43.3
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 3.1e-98 363.6 523 46.7
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 7.1e-95 352.4 592 43.6
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 5.1e-93 346.3 420 52.6
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 3.7e-91 340.1 398 50.0
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 8.8e-77 292.4 559 39.2
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 5.9e-73 279.6 562 37.2
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 8.5e-64 249.2 299 49.2
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 5.7e-60 236.5 500 37.6
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 2.0e-49 201.4 310 47.1
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 2.3e-45 188.0 273 41.8
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 1.2e-33 149.1 349 36.7
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 3.0e-24 117.9 89 66.3
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 3.0e-24 117.9 92 63.0
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.1e-23 115.9 109 57.8
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.6e-22 112.1 88 68.2
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 7.0e-18 96.7 240 29.6
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.6e-17 95.5 257 30.4
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 1.7e-16 92.0 240 27.9
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 6.6e-16 90.1 164 47.6
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.9e-15 88.6 218 28.0
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.1e-13 82.8 226 28.3
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 7.5e-12 76.6 81 53.1


User provided reference genes

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