Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 9.3e-81 303.5 158 100.0
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 3.0e-79 298.5 158 98.1
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 1.6e-77 292.7 162 95.1
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 2.8e-77 292.0 158 97.5
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 2.8e-77 292.0 158 97.5
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 1.1e-70 270.0 165 87.9
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 1.5e-70 269.6 158 88.0
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 1.7e-69 266.2 160 88.1
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 1.7e-69 266.2 160 88.1
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 2.8e-69 265.4 160 88.1
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 2.4e-68 262.3 164 84.1
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 2.4e-68 262.3 161 87.0
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 2.7e-64 248.8 163 80.4
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 5.1e-63 244.6 167 78.4
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 5.0e-58 228.0 162 74.1
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 6.5e-58 227.6 157 74.5
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.1e-57 226.9 157 74.5
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.5e-57 226.5 155 75.5
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 3.2e-57 225.3 159 75.5
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 3.2e-57 225.3 162 74.1
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 5.5e-57 224.6 158 74.1
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 9.4e-57 223.8 159 72.3
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 1.6e-56 223.0 160 72.5
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 1.6e-56 223.0 155 73.5
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 2.1e-56 222.6 162 72.8
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 2.1e-56 222.6 160 72.5
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 8.0e-56 220.7 163 71.8
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 8.0e-56 220.7 160 70.6
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 1.0e-55 220.3 155 72.3
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 1.4e-55 219.9 162 72.2
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 2.3e-55 219.2 156 71.8
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 2.3e-55 219.2 156 71.8
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 2.3e-55 219.2 155 75.5
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 2.3e-55 219.2 159 71.7
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 3.0e-55 218.8 155 73.5
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 4.0e-55 218.4 160 73.1
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 4.0e-55 218.4 159 71.7
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 5.2e-55 218.0 155 71.0
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 5.2e-55 218.0 158 72.8
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 8.8e-55 217.2 159 73.6
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 8.8e-55 217.2 157 70.1
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 8.8e-55 217.2 157 69.4
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 1.1e-54 216.9 152 71.7
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 2.0e-54 216.1 157 69.4
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 2.0e-54 216.1 157 69.4
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.0e-54 216.1 158 73.4
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 2.6e-54 215.7 159 73.0
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 4.4e-54 214.9 159 71.1
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 4.4e-54 214.9 161 70.8
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 4.4e-54 214.9 161 70.8
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 7.5e-54 214.2 160 70.0
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 2.2e-53 212.6 154 72.1
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 2.8e-53 212.2 156 71.8
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 6.3e-53 211.1 165 69.1
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 6.3e-53 211.1 158 71.5
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 6.3e-53 211.1 121 82.6
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 6.3e-53 211.1 121 82.6
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 8.2e-53 210.7 158 69.6
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 8.2e-53 210.7 157 70.7
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 8.2e-53 210.7 156 69.9
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 8.2e-53 210.7 159 68.6
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 1.4e-52 209.9 153 71.9
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 1.4e-52 209.9 121 82.6
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 1.8e-52 209.5 153 73.2
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 2.4e-52 209.1 156 69.2
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 2.4e-52 209.1 157 68.8
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 3.1e-52 208.8 155 70.3
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 4.1e-52 208.4 154 71.4
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 4.1e-52 208.4 152 69.7
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 4.1e-52 208.4 155 69.0
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 9.1e-52 207.2 156 68.6
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 1.6e-51 206.5 155 67.7
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 2.0e-51 206.1 156 67.9
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 2.0e-51 206.1 156 68.6
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 5.9e-51 204.5 159 66.0
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 7.7e-51 204.1 162 67.3
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 1.3e-50 203.4 152 66.4
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 2.9e-50 202.2 161 64.6
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 2.9e-50 202.2 158 68.4
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 3.8e-50 201.8 156 66.0
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 5.0e-50 201.4 156 67.9
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 5.0e-50 201.4 149 69.1
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 6.5e-50 201.1 162 66.7
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 8.5e-50 200.7 162 66.7
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.5e-49 199.9 158 67.1
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 1.9e-49 199.5 151 67.5
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 2.5e-49 199.1 133 72.9
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 2.5e-49 199.1 150 66.7
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 3.2e-49 198.7 158 65.2
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 4.2e-49 198.4 141 70.2
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 9.4e-49 197.2 132 69.7
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.2e-48 196.8 158 67.1
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 1.6e-48 196.4 106 98.1
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 1.6e-48 196.4 165 63.0
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 1.6e-48 196.4 156 66.7
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 2.7e-48 195.7 152 65.8
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 3.6e-48 195.3 165 64.2
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 4.7e-48 194.9 153 64.7
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 1.0e-47 193.7 155 64.5
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 1.4e-47 193.4 146 67.8
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 6.8e-47 191.0 141 66.7
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 6.8e-47 191.0 140 71.4
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 1.2e-46 190.3 149 63.8
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 1.5e-46 189.9 164 59.8
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 4.4e-46 188.3 118 71.2
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 4.1e-44 181.8 119 72.3
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 5.4e-44 181.4 138 69.6
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 7.0e-44 181.0 162 64.8
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 9.5e-41 170.6 149 62.4
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 4.7e-40 168.3 109 75.2
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.7e-37 159.8 91 83.5
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 1.9e-33 146.4 120 56.7
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 4.4e-30 135.2 148 48.0
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 4.4e-30 135.2 90 76.7
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 2.9e-29 132.5 90 75.6
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 2.4e-28 129.4 77 72.7
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 1.0e-26 124.0 82 72.0
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 3.0e-26 122.5 149 43.6
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 1.6e-16 90.1 74 64.9
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 4.7e-16 88.6 49 83.7
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 1.1e-15 87.4 49 85.7
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 1.2e-14 84.0 149 35.6
SMO119G0279 Selaginella moellendorffii HOM05D006548 ORTHO05D008064 4.9e-13 78.6 118 36.4
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 1.1e-12 77.4 168 41.1
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 1.6e-08 63.5 144 33.3


User provided reference genes

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