Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 6.0e-146 521.2 333 100.0
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 6.3e-119 431.4 329 83.0
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 4.8e-111 405.2 293 86.3
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.2e-106 390.6 337 80.4
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 9.7e-104 380.9 299 81.3
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 7.0e-102 374.8 340 81.5
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.4e-99 367.1 308 81.8
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 4.7e-98 362.1 311 76.5
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 5.2e-97 358.6 311 83.0
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.0e-92 344.4 317 76.3
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 1.0e-92 344.4 318 72.6
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.7e-92 343.6 311 72.3
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 6.5e-92 341.7 315 72.7
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 1.6e-90 337.0 283 80.6
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.0e-89 334.3 312 71.5
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 2.8e-87 326.2 316 68.4
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 2.5e-83 313.2 307 65.8
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 6.6e-76 288.5 317 63.1
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 6.1e-74 282.0 312 58.0
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.7e-72 275.4 312 59.6
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 2.4e-70 270.0 303 63.0
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.5e-69 266.2 310 55.2
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 3.5e-69 266.2 310 55.2
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 5.0e-68 262.3 308 57.8
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 6.6e-68 261.9 329 53.8
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.1e-67 261.2 312 54.8
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.3e-67 259.6 301 61.5
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 5.6e-67 258.8 309 58.9
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 9.5e-67 258.1 310 64.2
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.6e-66 257.3 315 56.2
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 2.1e-66 256.9 293 64.5
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.4e-65 254.2 295 62.0
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 2.3e-65 253.4 313 56.5
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 3.1e-65 253.1 323 53.6
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 5.2e-65 252.3 300 56.7
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 8.9e-65 251.5 305 55.1
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.5e-64 250.8 316 57.9
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 3.4e-64 249.6 312 63.5
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 4.4e-64 249.2 312 56.1
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 4.4e-64 249.2 323 54.2
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 9.8e-64 248.1 308 57.8
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 1.3e-63 247.7 313 62.3
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 2.2e-63 246.9 300 58.7
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.9e-63 245.7 300 57.3
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.1e-62 244.6 312 63.8
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.4e-62 244.2 312 60.3
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.4e-62 244.2 304 56.6
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.4e-62 244.2 304 55.3
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.4e-62 244.2 304 55.3
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 5.4e-62 242.3 321 56.1
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 7.0e-62 241.9 323 54.2
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 9.2e-62 241.5 315 54.9
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 9.2e-62 241.5 304 53.9
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 1.6e-61 240.7 316 57.6
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.6e-61 240.7 334 57.5
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.6e-61 240.7 320 55.0
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 2.0e-61 240.4 312 51.9
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.7e-61 240.0 316 57.3
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 3.5e-61 239.6 323 56.3
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 3.5e-61 239.6 323 56.3
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.6e-61 239.2 317 55.5
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 6.0e-61 238.8 317 51.4
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 6.0e-61 238.8 319 59.2
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.0e-60 238.0 314 53.2
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.7e-60 237.3 291 62.2
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 2.3e-60 236.9 325 56.0
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.3e-60 236.9 323 52.0
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 2.3e-60 236.9 314 58.0
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 2.3e-60 236.9 314 58.0
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 8.6e-60 235.0 312 57.4
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.1e-59 234.6 305 61.0
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.5e-59 234.2 315 56.5
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.9e-59 233.8 301 52.5
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 3.3e-59 233.0 316 51.9
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 7.3e-59 231.9 316 56.0
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 7.3e-59 231.9 305 58.7
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 7.3e-59 231.9 335 47.2
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 9.5e-59 231.5 312 56.1
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.8e-58 229.9 312 53.2
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.6e-58 229.6 332 53.3
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 3.6e-58 229.6 297 53.9
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 4.7e-58 229.2 313 58.5
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 6.2e-58 228.8 324 56.2
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 8.0e-58 228.4 312 57.4
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.1e-57 228.0 322 59.6
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.1e-57 228.0 332 53.6
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.1e-57 228.0 313 59.1
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.1e-57 228.0 318 57.2
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.8e-57 227.3 314 60.8
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.3e-57 226.9 306 49.0
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 2.3e-57 226.9 340 49.1
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 3.1e-57 226.5 311 50.2
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.0e-57 226.1 323 53.3
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 5.2e-57 225.7 338 51.8
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 6.8e-57 225.3 280 51.8
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.2e-56 224.6 286 55.9
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 2.0e-56 223.8 314 56.4
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 2.6e-56 223.4 317 58.7
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.6e-56 223.4 304 54.6
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.6e-56 223.4 304 57.2
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 3.4e-56 223.0 301 52.8
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 4.4e-56 222.6 309 57.3
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 1.3e-55 221.1 332 55.4
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 4.9e-55 219.2 310 49.4
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 4.9e-55 219.2 323 49.2
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 6.4e-55 218.8 324 53.4
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 6.4e-55 218.8 311 52.7
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 6.4e-55 218.8 311 52.7
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 2.4e-54 216.9 325 53.8
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 4.1e-54 216.1 306 56.9
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 5.4e-54 215.7 332 52.1
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 5.4e-54 215.7 323 50.8
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 7.1e-54 215.3 327 55.0
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 9.2e-54 214.9 329 53.5
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 1.6e-53 214.2 138 77.5
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 2.1e-53 213.8 291 56.4
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.7e-53 213.4 303 56.8
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 6.0e-53 212.2 311 48.6
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 1.0e-52 211.5 140 77.9
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 1.0e-52 211.5 326 57.1
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.7e-52 210.7 317 50.2
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.3e-52 210.3 340 50.0
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 8.6e-52 208.4 326 57.1
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 1.1e-51 208.0 297 54.9
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 2.5e-51 206.8 321 58.9
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 5.6e-51 205.7 306 48.0
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 1.8e-49 200.7 323 55.1
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 8.9e-49 198.4 302 52.6
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 1.5e-48 197.6 356 50.3
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 3.4e-48 196.4 422 41.5
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 2.2e-47 193.7 328 56.7
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 2.2e-47 193.7 293 51.9
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.7e-45 186.8 137 67.9
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 7.8e-45 185.3 280 55.4
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.3e-44 184.5 306 50.7
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 8.6e-44 181.8 311 46.9
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.1e-43 181.4 136 65.4
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-43 181.4 275 47.6
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 8.1e-42 175.3 314 46.5
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.4e-41 174.5 297 47.5
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 1.4e-41 174.5 138 65.2
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.8e-41 174.1 140 66.4
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 5.2e-41 172.6 136 61.8
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 9.9e-40 168.3 229 54.1
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.7e-37 160.2 299 47.8
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.6e-37 159.5 314 40.4
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.3e-36 157.9 212 63.2
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 5.1e-36 156.0 282 46.5
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 1.5e-35 154.5 289 50.2
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 1.3e-34 151.4 248 54.4
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 2.8e-34 150.2 109 67.9
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.4e-33 147.1 322 41.9
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 3.5e-29 133.3 334 38.6
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.0e-28 131.7 312 40.7
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 3.6e-26 123.2 328 44.2
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 8.1e-26 122.1 311 47.6
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 4.0e-25 119.8 80 76.2
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 4.5e-24 116.3 109 55.0
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 2.7e-21 107.1 286 49.3
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.5e-21 106.7 134 48.5
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 5.1e-20 102.8 194 42.3
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 4.3e-19 99.8 139 52.5
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.3e-18 98.2 104 57.7
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.8e-18 97.1 86 64.0
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 3.1e-17 93.6 94 52.1
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 2.9e-15 87.0 84 57.1
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 6.5e-15 85.9 84 50.0
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 4.2e-14 83.2 64 57.8
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.9e-12 76.6 88 51.1
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 8.7e-12 75.5 79 57.0
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.4e-11 72.4 83 50.6
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.7e-10 70.1 111 44.1
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 4.8e-10 69.7 187 34.2
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 6.2e-10 69.3 79 54.4
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.8e-09 67.8 76 55.3
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 6.9e-09 65.9 57 54.4


User provided reference genes

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