Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 9.7e-74 280.0 139 100.0
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 9.7e-74 280.0 139 100.0
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 1.3e-65 253.1 144 90.3
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 2.2e-65 252.3 139 91.4
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 3.5e-55 218.4 143 76.9
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 5.7e-50 201.1 142 71.8
BcaC05g29553 Brassica carinata HOM05D005992 ORTHO05D007476 1.2e-47 193.4 96 100.0
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 4.7e-36 154.8 142 57.7
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 4.7e-36 154.8 146 57.5
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 1.8e-35 152.9 156 53.8
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 7.5e-34 147.5 143 58.7
CARHR082280 Cardamine hirsuta HOM05D005992 ORTHO05D007476 1.3e-33 146.7 142 55.6
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 4.1e-32 141.7 140 54.3
Aa31LG5G18140 Aethionema arabicum HOM05D005992 ORTHO05D007476 6.8e-27 124.4 89 64.0
AT3G07580 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 1.3e-25 120.2 118 54.2
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 1.9e-24 116.3 108 56.5
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 3.0e-22 109.0 108 53.7
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 5.2e-19 98.2 102 52.9
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 2.9e-17 92.4 161 36.6
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 2.4e-16 89.4 156 39.1
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 3.2e-16 89.0 153 38.6
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 7.1e-16 87.8 163 36.2
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 2.7e-15 85.9 154 37.7
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 3.5e-15 85.5 154 36.4
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 6.0e-15 84.7 160 35.6
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 7.8e-15 84.3 152 38.2
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 7.8e-15 84.3 143 40.6
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 1.3e-14 83.6 167 37.7
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 1.3e-14 83.6 154 37.0
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 2.3e-14 82.8 152 34.9
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 3.0e-14 82.4 150 40.0
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 5.1e-14 81.6 135 40.7
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 5.1e-14 81.6 152 36.8
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 8.7e-14 80.9 152 35.5
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 8.7e-14 80.9 143 39.2
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.1e-13 80.5 152 36.2
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.5e-13 80.1 152 34.9
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 1.5e-13 80.1 162 37.0
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 1.5e-13 80.1 145 39.3
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 3.3e-13 79.0 157 33.8
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 4.3e-13 78.6 124 39.5
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 5.6e-13 78.2 157 36.9
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 7.3e-13 77.8 166 34.9
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 7.3e-13 77.8 160 34.4
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 9.6e-13 77.4 149 35.6
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 9.6e-13 77.4 151 36.4
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 1.3e-12 77.0 155 35.5
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 1.3e-12 77.0 154 37.0
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 1.3e-12 77.0 154 35.7
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.3e-12 77.0 142 35.9
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 1.6e-12 76.6 159 32.1
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 1.6e-12 76.6 159 32.1
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 2.8e-12 75.9 125 40.0
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 2.8e-12 75.9 125 40.0
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 3.6e-12 75.5 141 38.3
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 3.6e-12 75.5 125 40.0
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 6.2e-12 74.7 131 39.7
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 1.4e-11 73.6 111 43.2
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.4e-11 73.6 158 29.7
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 1.4e-11 73.6 116 38.8
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 2.4e-11 72.8 160 34.4
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 3.1e-11 72.4 155 34.2
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 4.0e-11 72.0 163 33.7
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 4.0e-11 72.0 142 33.8
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 4.0e-11 72.0 152 35.5
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 5.3e-11 71.6 155 35.5
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 5.3e-11 71.6 99 40.4
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 6.9e-11 71.2 87 42.5
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 9.0e-11 70.9 162 35.8
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 9.0e-11 70.9 141 34.8
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 1.2e-10 70.5 141 32.6
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 2.6e-10 69.3 151 33.1
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.4e-10 68.9 152 34.2
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 4.4e-10 68.6 129 38.0
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 5.8e-10 68.2 149 30.9
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 5.8e-10 68.2 136 36.8
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 7.6e-10 67.8 136 36.8
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.7e-09 66.6 152 32.9
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 1.7e-09 66.6 95 43.2
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 2.2e-09 66.2 71 49.3
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 4.9e-09 65.1 155 34.8
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 4.9e-09 65.1 151 33.1
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 4.9e-09 65.1 133 37.6
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 6.4e-09 64.7 115 39.1
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 1.1e-08 63.9 146 36.3
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 1.4e-08 63.5 119 35.3
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.4e-08 63.5 63 54.0
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 2.4e-08 62.8 148 33.8
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 3.2e-08 62.4 161 32.9
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 3.2e-08 62.4 68 42.6
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 4.2e-08 62.0 121 37.2
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 5.4e-08 61.6 148 33.1
Actinidia23817 Actinidia chinensis HOM05D005992 ORTHO05D007476 7.1e-08 61.2 82 37.8
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 1.2e-07 60.5 43 62.8
BcaC04g23782 Brassica carinata HOM05D005992 ORTHO05D007476 1.2e-07 60.5 66 53.0
C09p04700 Brassica napus HOM05D005992 ORTHO05D007476 1.2e-07 60.5 66 53.0
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.2e-07 60.5 152 30.3
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 1.6e-07 60.1 95 40.0
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 2.1e-07 59.7 125 36.0
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 4.6e-07 58.5 155 34.2
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 6.0e-07 58.2 45 57.8
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 1.3e-06 57.0 121 34.7
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 3.0e-06 55.8 142 33.1
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 5.1e-06 55.1 153 31.4
A09p04390 Brassica napus HOM05D005992 ORTHO05D007476 5.1e-06 55.1 42 64.3
BraA09t36076Z Brassica rapa HOM05D005992 ORTHO05D007476 5.1e-06 55.1 42 64.3
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 6.6e-06 54.7 112 35.7
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 6.6e-06 54.7 153 31.4


User provided reference genes

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