Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 7.6e-283 976.5 487 100.0
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 3.7e-277 957.6 489 98.4
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 7.2e-273 943.3 489 97.1
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 5.9e-259 897.1 489 93.3
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.3e-258 896.0 489 93.0
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 1.7e-234 815.8 499 85.4
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 3.8e-234 814.7 497 85.5
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 1.1e-233 813.1 508 85.6
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 1.9e-233 812.4 508 84.8
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 2.0e-230 802.4 498 83.7
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 2.0e-227 792.3 509 82.7
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 3.5e-227 791.6 511 83.0
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 6.8e-223 777.3 513 80.9
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 2.4e-220 768.8 514 80.4
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 1.9e-217 759.2 508 79.7
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 4.9e-205 718.0 506 77.5
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.1e-196 690.3 507 72.8
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.9e-193 679.5 508 72.6
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 4.3e-193 678.3 508 72.4
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 2.8e-192 675.6 517 71.8
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 2.8e-192 675.6 510 72.5
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 2.6e-190 669.1 507 71.2
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 5.4e-188 661.4 508 70.9
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.1e-185 653.7 498 70.3
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 5.3e-183 644.8 511 69.1
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 9.0e-183 644.0 507 68.8
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 1.7e-181 639.8 505 68.1
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 3.8e-181 638.6 511 69.7
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 7.1e-180 634.4 501 68.7
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 7.1e-180 634.4 509 67.6
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.6e-179 633.3 510 68.0
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 2.1e-179 632.9 505 68.5
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.5e-179 632.1 510 66.3
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 7.9e-179 630.9 506 66.8
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.3e-178 630.2 498 67.5
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.3e-178 630.2 512 66.8
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 5.1e-178 628.2 507 67.3
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 1.1e-177 627.1 509 66.2
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 1.1e-177 627.1 510 68.2
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 1.5e-177 626.7 507 67.3
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.3e-176 623.6 501 68.1
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 1.6e-176 623.2 497 68.0
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 1.1e-175 620.5 509 66.0
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 4.0e-175 618.6 509 66.4
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 5.3e-175 618.2 489 66.3
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 9.0e-175 617.5 517 65.4
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 4.5e-174 615.1 517 65.4
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 7.6e-174 614.4 501 65.5
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 1.3e-173 613.6 500 66.4
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 1.7e-173 613.2 496 66.1
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 1.7e-173 613.2 500 66.2
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 8.4e-173 610.9 498 66.1
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 1.9e-172 609.8 504 66.7
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.9e-172 609.8 504 66.1
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.5e-172 608.2 503 67.0
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 9.3e-172 607.4 504 66.7
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 1.6e-171 606.7 510 64.5
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 2.1e-171 606.3 503 66.6
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 6.0e-171 604.7 509 65.2
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 8.7e-170 600.9 503 65.4
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 5.7e-169 598.2 501 65.3
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 9.6e-169 597.4 519 63.6
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.3e-168 597.0 504 62.5
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 1.6e-168 596.7 497 65.4
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 2.1e-168 596.3 498 64.7
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 2.0e-166 589.7 493 64.7
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 2.6e-166 589.3 530 63.2
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 7.6e-166 587.8 518 63.1
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 5.0e-165 585.1 497 64.2
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.6e-163 578.9 508 62.6
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.3e-162 577.0 514 63.6
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.3e-162 577.0 498 63.5
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 2.3e-162 576.2 507 63.3
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 5.1e-162 575.1 509 62.7
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 6.7e-162 574.7 503 64.4
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 1.5e-161 573.5 505 63.2
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.9e-161 573.2 502 62.9
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 2.5e-161 572.8 507 61.9
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 3.3e-161 572.4 507 61.7
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 7.4e-161 571.2 509 63.1
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 6.3e-160 568.2 514 61.9
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 5.3e-159 565.1 520 60.4
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 6.9e-159 564.7 505 62.2
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 9.1e-159 564.3 499 63.7
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 2.6e-158 562.8 517 61.1
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 7.7e-158 561.2 515 61.0
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.7e-157 560.1 504 62.9
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 8.5e-157 557.8 507 62.1
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 1.1e-156 557.4 500 63.4
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 1.4e-156 557.0 506 59.9
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.4e-156 557.0 513 62.4
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 1.9e-156 556.6 502 60.4
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 5.5e-156 555.1 459 64.7
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 1.6e-155 553.5 517 60.9
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 8.8e-154 547.7 502 60.2
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 9.1e-151 537.7 507 59.8
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 1.4e-148 530.4 486 60.7
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.4e-148 530.4 462 62.1
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 5.2e-146 521.9 477 59.1
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 6.7e-146 521.5 513 56.7
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 8.2e-144 514.6 515 56.5
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 6.5e-141 505.0 515 55.7
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 2.0e-137 493.4 512 56.8
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 4.8e-136 488.8 503 58.3
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 5.3e-135 485.3 503 57.1
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 1.2e-134 484.2 503 57.5
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 1.4e-130 470.7 449 59.2
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 1.4e-130 470.7 493 55.6
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 3.1e-127 459.5 483 55.5
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 1.1e-124 451.1 529 51.6
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.2e-115 421.0 489 51.5
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 4.7e-115 419.1 527 49.1
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 6.1e-115 418.7 485 52.0
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 1.5e-113 414.1 510 49.0
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 6.0e-102 375.6 302 63.9
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 5.0e-101 372.5 487 47.4
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.3e-93 347.8 291 64.3
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 1.2e-91 341.3 552 41.3
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 2.4e-82 310.5 493 43.8
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 3.4e-57 226.9 284 46.5
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 1.9e-52 211.1 335 40.3
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 1.3e-48 198.4 204 57.4
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 4.2e-39 166.8 272 39.7
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 7.4e-28 129.4 97 69.1
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 7.7e-25 119.4 472 26.3
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 3.8e-24 117.1 444 27.3
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.6e-22 110.5 85 61.2
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 2.2e-19 101.3 69 75.4
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 8.0e-14 82.8 65 55.4
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.0e-13 82.4 56 67.9
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 8.3e-11 72.8 64 53.1
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 2.0e-09 68.2 169 30.8


User provided reference genes

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