Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.4e-162 576.2 298 100.0
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 7.7e-161 570.5 298 98.7
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 2.7e-158 562.0 298 97.0
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.0e-157 560.1 298 96.3
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.5e-156 556.2 298 95.6
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.5e-156 556.2 298 95.6
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 4.9e-155 551.2 298 94.3
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.8e-154 549.3 298 94.0
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 2.4e-154 548.9 298 94.0
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 2.9e-152 542.0 298 92.3
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 5.0e-152 541.2 298 92.6
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 4.3e-151 538.1 298 92.3
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 3.6e-150 535.0 303 91.4
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.4e-149 533.1 280 97.9
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 2.9e-147 525.4 299 90.0
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 5.8e-132 474.6 298 80.5
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.3e-123 446.8 299 75.3
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 9.2e-122 440.7 298 73.5
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 4.6e-121 438.3 298 72.5
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.7e-120 436.4 298 72.1
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.7e-120 436.4 296 73.6
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.3e-120 436.0 298 72.8
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 3.0e-120 435.6 298 72.8
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 6.6e-120 434.5 295 73.9
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-119 433.7 298 72.5
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.5e-119 433.3 298 72.5
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.5e-119 433.3 298 72.5
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.9e-119 433.0 297 74.1
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 5.6e-119 431.4 297 72.4
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 9.6e-119 430.6 298 72.1
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 9.6e-119 430.6 298 71.1
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 6.2e-118 427.9 297 72.7
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.4e-117 426.8 297 72.1
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.8e-117 426.4 297 72.1
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.8e-117 426.4 298 71.1
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 2.4e-117 426.0 299 72.2
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 4.0e-117 425.2 298 71.8
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 5.2e-117 424.9 297 72.1
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 8.9e-117 424.1 297 71.4
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.2e-116 423.7 297 70.7
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.5e-116 423.3 295 71.5
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.5e-116 423.3 300 71.0
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.6e-116 422.5 297 71.4
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 2.6e-116 422.5 297 70.4
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 5.8e-116 421.4 298 73.5
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 9.9e-116 420.6 298 71.1
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.3e-115 420.2 298 70.8
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.3e-115 420.2 297 72.1
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 2.2e-115 419.5 297 71.0
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.9e-115 419.1 297 71.0
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.4e-114 416.0 298 70.5
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 3.2e-114 415.6 298 70.8
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 3.2e-114 415.6 297 71.7
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.2e-114 415.6 298 71.5
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 5.4e-114 414.8 298 70.1
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 7.1e-114 414.5 298 69.1
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.2e-113 413.7 298 70.1
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.2e-113 413.7 298 70.5
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.2e-113 413.7 297 68.4
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.1e-113 412.9 298 70.8
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 4.6e-113 411.8 298 68.8
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 4.6e-113 411.8 298 68.8
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 4.6e-113 411.8 301 68.1
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.0e-112 410.6 379 58.0
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.3e-112 410.2 297 68.7
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 1.3e-112 410.2 299 66.9
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.3e-112 409.5 301 70.4
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 3.0e-112 409.1 299 66.6
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.0e-112 409.1 301 68.4
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 8.7e-112 407.5 336 63.7
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 8.7e-112 407.5 299 66.6
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.5e-111 406.8 333 64.0
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.5e-111 406.8 298 67.4
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.9e-111 406.4 297 66.3
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 2.5e-111 406.0 298 67.4
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 3.3e-111 405.6 301 68.1
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 7.3e-111 404.4 296 68.9
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.3e-110 403.7 299 68.6
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.1e-110 402.9 299 67.9
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 4.8e-110 401.7 296 67.9
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.4e-109 400.2 264 73.9
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.4e-109 400.2 296 69.6
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.8e-109 399.8 301 68.8
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.8e-109 399.8 300 67.7
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 2.4e-109 399.4 294 68.0
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 4.0e-109 398.7 296 66.9
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.3e-109 398.3 298 69.1
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 6.9e-109 397.9 301 67.8
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 6.9e-109 397.9 296 67.2
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 6.9e-109 397.9 291 67.0
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 6.9e-109 397.9 301 68.4
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.2e-108 397.1 296 67.2
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 2.0e-108 396.4 301 67.4
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 2.6e-108 396.0 280 70.4
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.4e-108 395.6 299 67.2
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 5.8e-108 394.8 301 66.4
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 7.6e-108 394.4 272 72.8
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.7e-107 393.3 347 60.2
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 4.9e-107 391.7 329 63.5
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 6.4e-107 391.3 304 65.5
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.1e-106 390.6 298 67.8
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.4e-106 390.2 299 67.2
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.9e-106 389.8 294 68.4
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 2.4e-106 389.4 302 66.6
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 2.4e-106 389.4 294 67.0
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.2e-105 387.1 299 64.9
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.7e-105 386.0 296 64.9
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.0e-104 384.0 300 66.0
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 5.1e-104 381.7 299 65.9
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.1e-103 380.6 264 69.7
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 8.1e-102 374.4 259 72.2
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.1e-101 374.0 257 72.8
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.4e-101 372.9 279 65.6
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.2e-100 370.5 299 62.5
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.0e-100 369.8 281 64.4
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 3.4e-100 369.0 265 67.2
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 5.8e-100 368.2 302 63.9
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.6e-97 360.1 302 62.6
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 4.6e-97 358.6 267 68.2
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.8e-96 356.7 303 60.7
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.3e-95 352.1 299 60.5
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 4.3e-95 352.1 302 58.3
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 2.8e-94 349.4 302 60.3
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.4e-93 347.1 294 63.3
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 3.1e-93 345.9 299 58.2
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.7e-91 340.1 298 59.1
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.2e-90 335.9 287 59.9
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 1.3e-86 323.9 214 72.9
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 2.4e-85 319.7 265 60.4
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-82 310.8 230 69.6
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 2.3e-80 303.1 281 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 1.4e-77 293.9 276 56.2
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 2.4e-77 293.1 274 56.9
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.6e-76 289.7 295 48.8
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 4.6e-73 278.9 298 49.0
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 4.6e-73 278.9 278 52.2
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 7.9e-73 278.1 298 48.3
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.8e-70 269.6 277 51.6
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.7e-70 269.2 302 52.6
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 5.3e-69 265.4 247 58.3
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 1.2e-68 264.2 274 51.1
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.7e-67 260.4 277 49.1
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 3.8e-67 259.2 277 48.7
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.2e-66 255.8 203 64.0
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 2.8e-62 243.0 195 65.6
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.0e-59 234.6 219 58.0
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.9e-59 233.0 233 51.9
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.1e-58 231.1 169 67.5
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 9.1e-53 211.5 217 50.2
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.5e-52 209.1 307 45.0
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 1.0e-51 208.0 148 68.2
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 8.5e-51 204.9 210 51.0
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 7.2e-50 201.8 149 67.1
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 2.1e-49 200.3 183 56.8
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.8e-48 197.2 283 39.6
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 7.2e-42 175.3 159 59.1
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 8.6e-35 151.8 261 36.8
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 2.7e-28 130.2 313 30.0
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 5.6e-26 122.5 104 64.4
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 5.8e-23 112.5 210 34.3
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.3e-19 101.3 126 50.8
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.3e-19 101.3 76 69.7
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 3.0e-19 100.1 293 25.9
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 5.0e-19 99.4 114 47.4
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 5.2e-16 89.4 264 30.7
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 2.8e-09 67.0 71 47.9
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 5.8e-07 59.3 184 32.1


User provided reference genes

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