Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34589H Brassica oleracea HOM05D003142 ORTHO05D003600 8.4e-109 397.1 213 100.0
BcaB04g20095 Brassica carinata HOM05D003142 ORTHO05D003600 1.4e-34 150.6 149 63.1
BraA09t36620Z Brassica rapa HOM05D003142 ORTHO05D003600 3.5e-30 136.0 136 61.0
BcaC04g23165 Brassica carinata HOM05D003142 ORTHO05D003600 1.0e-29 134.4 136 61.0
C09p11500 Brassica napus HOM05D003142 ORTHO05D003600 1.0e-29 134.4 136 61.0
BolC9t54039H Brassica oleracea HOM05D003142 ORTHO05D003600 1.0e-29 134.4 136 61.0
Sp2g29820 Schrenkiella parvula HOM05D003142 ORTHO05D003600 4.3e-28 129.0 161 54.0
Thhalv10004096m.g Eutrema salsugineum HOM05D003142 ORTHO05D003600 4.7e-27 125.6 157 54.1
A09p09730 Brassica napus HOM05D003142 ORTHO05D003600 6.1e-27 125.2 164 51.2
CARHR280830 Cardamine hirsuta HOM05D003142 ORTHO05D003600 3.7e-24 115.9 160 50.6
Carub.0008s2765 Capsella rubella HOM05D003142 ORTHO05D003600 4.6e-22 109.0 143 52.4
AT5G66840 Arabidopsis thaliana HOM05D003142 ORTHO05D003600 3.9e-21 105.9 143 50.3
Aa31LG1G15400 Aethionema arabicum HOM05D003142 ORTHO05D003600 6.6e-21 105.1 198 42.9
AL8G44560 Arabidopsis lyrata HOM05D003142 ORTHO05D003600 6.6e-21 105.1 143 49.7
THA.LOC104827019 Tarenaya hassleriana HOM05D003142 ORTHO05D003600 1.0e-13 81.3 148 40.5
Atru.chr3.400 Acer truncatum HOM05D003142 ORTHO05D003600 1.9e-12 77.0 141 42.6
DCAR_010908 Daucus carota HOM05D003142 ORTHO05D003600 1.9e-12 77.0 145 39.3
Prupe.7G136600 Prunus persica HOM05D003142 ORTHO05D003600 4.3e-12 75.9 154 39.6
Aqoxy6G01414 Aquilegia oxysepala HOM05D003142 ORTHO05D003600 3.6e-11 72.8 168 35.7
MD02G1168400 Malus domestica HOM05D003142 ORTHO05D003600 6.2e-11 72.0 139 38.8
CANSAT01G0954 Cannabis sativa HOM05D003142 ORTHO05D003600 1.4e-10 70.9 163 36.2
CAN.G836.63 Capsicum annuum HOM05D003142 ORTHO05D003600 1.4e-10 70.9 139 37.4
CSS0029766 Camellia sinensis var. sinensis HOM05D003142 ORTHO05D003600 2.3e-10 70.1 137 40.9
ClCG02G013230 Citrullus lanatus HOM05D003142 ORTHO05D003600 2.3e-10 70.1 171 35.1
ECA232G3349 Erigeron canadensis HOM05D003142 ORTHO05D003600 3.1e-10 69.7 147 37.4
RcHm_v2.0_Chr2g0104981 Rosa chinensis HOM05D003142 ORTHO05D003600 3.1e-10 69.7 139 38.8
HPP92_004082 Vanilla planifolia HOM05D003142 ORTHO05D003600 3.1e-10 69.7 139 38.1
arahy.Tifrunner.gnm1.ann1.U4D6S9 Arachis hypogaea HOM05D003142 ORTHO05D003600 4.0e-10 69.3 150 38.7
Ca_24785_v3 Cicer arietinum L. HOM05D003142 ORTHO05D003600 4.0e-10 69.3 150 38.0
AUR62003852 Chenopodium quinoa HOM05D003142 ORTHO05D003600 5.2e-10 68.9 142 40.1
vmacro05325 Vaccinium macrocarpon HOM05D003142 ORTHO05D003600 5.2e-10 68.9 180 36.1
arahy.Tifrunner.gnm1.ann1.4YD75G Arachis hypogaea HOM05D003142 ORTHO05D003600 6.8e-10 68.6 150 38.7
Manes.12G101900 Manihot esculenta HOM05D003142 ORTHO05D003600 6.8e-10 68.6 152 38.8
HPP92_004108 Vanilla planifolia HOM05D003142 ORTHO05D003600 6.8e-10 68.6 139 38.1
FvH4_1g15670 Fragaria vesca HOM05D003142 ORTHO05D003600 8.9e-10 68.2 164 36.0
Nitab4.5_0000310g0210 Nicotiana tabacum HOM05D003142 ORTHO05D003600 8.9e-10 68.2 180 30.6
Peaxi162Scf00916g00223 Petunia axillaris HOM05D003142 ORTHO05D003600 8.9e-10 68.2 139 36.7
Nitab4.5_0000440g0180 Nicotiana tabacum HOM05D003142 ORTHO05D003600 1.2e-09 67.8 151 35.1
Sed0019220 Sechium edule HOM05D003142 ORTHO05D003600 1.2e-09 67.8 138 39.1
TWI73G1278 Tripterygium wilfordii HOM05D003142 ORTHO05D003600 1.2e-09 67.8 131 39.7
Dinv39877 Davidia involucrata HOM05D003142 ORTHO05D003600 1.5e-09 67.4 131 39.7
Cpa.g.sc6.382 Carica papaya HOM05D003142 ORTHO05D003600 2.6e-09 66.6 156 35.3
Rhsim10G0119900 Rhododendron simsii HOM05D003142 ORTHO05D003600 2.6e-09 66.6 141 39.7
Haze_15430 Corylus avellana HOM05D003142 ORTHO05D003600 3.4e-09 66.2 139 39.6
Medtr5g017820 Medicago truncatula HOM05D003142 ORTHO05D003600 3.4e-09 66.2 136 41.9
ATR1133G040 Amborella trichopoda HOM05D003142 ORTHO05D003600 4.4e-09 65.9 132 38.6
Cfa003994 Carpinus fangiana HOM05D000591 ORTHO05D000579 5.8e-09 65.5 139 39.6
Migut.H00456 Erythranthe guttata HOM05D003142 ORTHO05D003600 5.8e-09 65.5 136 39.7
Sopen02g035190 Solanum pennellii HOM05D003142 ORTHO05D003600 5.8e-09 65.5 141 36.9
Ah.02g124010 Amaranthus hybridus HOM05D003142 ORTHO05D003600 7.5e-09 65.1 139 36.0
AUR62001955 Chenopodium quinoa HOM05D003142 ORTHO05D003600 7.5e-09 65.1 140 39.3
FAN23G2712 Fragaria x ananassa HOM05D003142 ORTHO05D003600 7.5e-09 65.1 182 33.0
FAN28G1520 Fragaria x ananassa HOM05D000591 ORTHO05D000579 7.5e-09 65.1 182 33.0
Hma1.2p1_1415F.1_g281980 Hydrangea macrophylla HOM05D003142 ORTHO05D003600 7.5e-09 65.1 139 40.3
Lj2g0011618 Lotus japonicus HOM05D003142 ORTHO05D003600 9.8e-09 64.7 131 41.2
Nn6g35659 Nelumbo nucifera HOM05D003142 ORTHO05D003600 9.8e-09 64.7 156 34.6
Phvul.002G020700 Phaseolus vulgaris HOM05D003142 ORTHO05D003600 9.8e-09 64.7 135 37.0
Solyc02g090530.4 Solanum lycopersicum HOM05D003142 ORTHO05D003600 1.3e-08 64.3 141 36.2
COL.COLO4_11378 Corchorus olitorius HOM05D000591 ORTHO05D000579 1.7e-08 63.9 130 37.7
HanXRQChr14g0430641 Helianthus annuus HOM05D003142 ORTHO05D003600 1.7e-08 63.9 129 40.3
Lsat_1_v5_gn_4_167040 Lactuca sativa HOM05D003142 ORTHO05D003600 2.9e-08 63.2 136 37.5
HanXRQChr14g0430661 Helianthus annuus HOM05D003142 ORTHO05D003600 3.7e-08 62.8 122 39.3
Lalb_Chr09g0323011 Lupinus albus HOM05D003142 ORTHO05D003600 3.7e-08 62.8 146 37.0
Potri.005G136000 Populus trichocarpa HOM05D003142 ORTHO05D003600 3.7e-08 62.8 140 37.1
CSS0002964 Camellia sinensis var. sinensis HOM05D003142 ORTHO05D003600 4.9e-08 62.4 195 30.3
CSS0037213 Camellia sinensis var. sinensis HOM05D003142 ORTHO05D003600 4.9e-08 62.4 195 30.3
Glyma.11G057900 Glycine max HOM05D003142 ORTHO05D003600 4.9e-08 62.4 136 36.8
VMungo1215G1060 Vigna mungo HOM05D003142 ORTHO05D003600 4.9e-08 62.4 135 35.6
SGA_v2.0_scaffold15G07260 Striga asiatica HOM05D003142 ORTHO05D003600 6.4e-08 62.0 137 38.7
CsaV3_2G017280 Cucumis sativus L. HOM05D003142 ORTHO05D003600 8.3e-08 61.6 171 31.6
Oeu021839.1 Olea europaea HOM05D003142 ORTHO05D003600 8.3e-08 61.6 138 38.4
CANSAT56G4392 Cannabis sativa HOM05D003142 ORTHO05D003600 1.1e-07 61.2 188 31.4
CDE11G0511 Ceratophyllum demersum HOM05D003142 ORTHO05D003600 1.1e-07 61.2 147 31.3
Glyma.01G184400 Glycine max HOM05D003142 ORTHO05D003600 1.1e-07 61.2 139 36.7
Gohir.D12G088700 Gossypium hirsutum HOM05D003142 ORTHO05D003600 1.1e-07 61.2 141 35.5
Gohir.A12G070100 Gossypium hirsutum HOM05D003142 ORTHO05D003600 1.4e-07 60.8 147 34.7
TPR.G31100 Trifolium pratense HOM05D003142 ORTHO05D003600 1.4e-07 60.8 139 39.6
Gorai.011G062300 Gossypium raimondii HOM05D003142 ORTHO05D003600 1.9e-07 60.5 145 33.8
MBI13_g01659_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D002265 1.9e-07 60.5 143 35.7
Pp3c24_14400 Physcomitrium patens HOM05D003142 ORTHO05D003600 1.9e-07 60.5 147 35.4
PGSC0003DMG400010058 Solanum tuberosum HOM05D003142 ORTHO05D003600 1.9e-07 60.5 130 34.6
arahy.Tifrunner.gnm1.ann1.8YD36W Arachis hypogaea HOM05D003142 ORTHO05D003600 2.4e-07 60.1 145 34.5
arahy.Tifrunner.gnm1.ann1.J5EU5Y Arachis hypogaea HOM05D003142 ORTHO05D003600 2.4e-07 60.1 188 30.9
C01p12020 Brassica napus HOM05D007723 ORTHO05D019955 3.2e-07 59.7 161 32.9
TPR.G16663 Trifolium pratense HOM05D003142 ORTHO05D003600 3.2e-07 59.7 191 29.8
TAR624G0191 Trochodendron aralioides HOM05D003142 ORTHO05D003600 3.2e-07 59.7 147 34.7
TAR381G1689 Trochodendron aralioides HOM05D003142 ORTHO05D003600 4.1e-07 59.3 178 30.9
Actinidia21804 Actinidia chinensis HOM05D003142 ORTHO05D003600 5.4e-07 58.9 148 34.5
ATR0681G266 Amborella trichopoda HOM05D003142 ORTHO05D003600 5.4e-07 58.9 147 34.7
Lsat_1_v5_gn_4_91360 Lactuca sativa HOM05D003142 ORTHO05D003600 5.4e-07 58.9 160 33.1
Rhsim08G0241500 Rhododendron simsii HOM05D003142 ORTHO05D003600 5.4e-07 58.9 148 35.1
BcaC09g51543 Brassica carinata HOM05D007723 ORTHO05D019955 7.1e-07 58.5 144 33.3
BolC1t01176H Brassica oleracea HOM05D007723 ORTHO05D019955 7.1e-07 58.5 144 33.3
Ciclev10025568m.g Citrus clementina HOM05D003142 ORTHO05D003600 7.1e-07 58.5 136 34.6
CAN.G1743.6 Capsicum annuum HOM05D003142 ORTHO05D003600 9.2e-07 58.2 156 31.4
FAN14G2660 Fragaria x ananassa HOM05D003142 ORTHO05D003600 9.2e-07 58.2 156 34.0
Oeu005588.1 Olea europaea HOM05D003142 ORTHO05D003600 9.2e-07 58.2 133 34.6
Oeu012001.1 Olea europaea HOM05D003142 ORTHO05D003600 9.2e-07 58.2 109 41.3
QL05p003308 Quercus lobata HOM05D003142 ORTHO05D003600 9.2e-07 58.2 145 34.5
GSVIVG01016711001 Vitis vinifera HOM05D003142 ORTHO05D003600 9.2e-07 58.2 136 33.8
CDE05G1488 Ceratophyllum demersum HOM05D003142 ORTHO05D003600 1.2e-06 57.8 147 29.9
HanXRQChr15g0497171 Helianthus annuus HOM05D003142 ORTHO05D003600 1.2e-06 57.8 178 29.8
FvH4_6g35210 Fragaria vesca HOM05D003142 ORTHO05D003600 1.6e-06 57.4 145 33.8
Gorai.008G074400 Gossypium raimondii HOM05D003142 ORTHO05D003600 2.1e-06 57.0 141 34.0
Thecc.06G125300 Theobroma cacao HOM05D003142 ORTHO05D003600 2.1e-06 57.0 145 33.1
Actinidia12061 Actinidia chinensis HOM05D003142 ORTHO05D003600 2.7e-06 56.6 164 33.5
Duzib235G1234 Durio zibethinus HOM05D003142 ORTHO05D003600 2.7e-06 56.6 145 32.4
Oeu012014.1 Olea europaea HOM05D003142 ORTHO05D003600 2.7e-06 56.6 138 36.2
Prupe.3G037000 Prunus persica HOM05D003142 ORTHO05D003600 2.7e-06 56.6 145 33.8
Thecc.01G052100 Theobroma cacao HOM05D003142 ORTHO05D003600 2.7e-06 56.6 158 33.5
CsaV3_7G034230 Cucumis sativus L. HOM05D003142 ORTHO05D003600 3.5e-06 56.2 159 32.1
PSO675G6917 Papaver somniferum HOM05D003142 ORTHO05D003600 3.5e-06 56.2 139 36.7
Sed0022478 Sechium edule HOM05D003142 ORTHO05D003600 3.5e-06 56.2 145 33.1
Sopen06g022470 Solanum pennellii HOM05D003142 ORTHO05D003600 3.5e-06 56.2 173 30.1
Atru.chr1.4091 Acer truncatum HOM05D003142 ORTHO05D003600 4.6e-06 55.8 136 33.1
ECA232G3972 Erigeron canadensis HOM05D003142 ORTHO05D003600 4.6e-06 55.8 143 33.6
Medtr8g022240 Medicago truncatula HOM05D003142 ORTHO05D003600 4.6e-06 55.8 174 29.9
SGA_v2.0_scaffold71G23884 Striga asiatica HOM05D003142 ORTHO05D003600 4.6e-06 55.8 147 33.3
Ca_04807_v3 Cicer arietinum L. HOM05D003142 ORTHO05D003600 6.0e-06 55.5 215 30.2
Gohir.D10G058200 Gossypium hirsutum HOM05D003142 ORTHO05D003600 6.0e-06 55.5 147 34.0
PSO541G2734 Papaver somniferum HOM05D003142 ORTHO05D003600 6.0e-06 55.5 134 35.8
MSTRG.10930 Avicennia marina HOM05D003142 ORTHO05D003600 7.8e-06 55.1 158 31.0
Cc04_g01010 Coffea canephora HOM05D003142 ORTHO05D003600 7.8e-06 55.1 172 31.4
Gohir.A10G056300 Gossypium hirsutum HOM05D003142 ORTHO05D003600 7.8e-06 55.1 156 32.1
MD09G1177700 Malus domestica HOM05D003142 ORTHO05D003600 7.8e-06 55.1 136 33.1


User provided reference genes

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