Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 0.0e+00 1147.1 598 100.0
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 0.0e+00 1127.1 598 98.3
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 0.0e+00 1119.0 597 97.7
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 0.0e+00 1091.3 598 95.8
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 4.9e-311 1070.5 597 94.0
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.1e-310 1069.3 597 94.0
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 6.9e-310 1066.6 597 93.6
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.2e-309 1065.8 596 93.8
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 6.5e-308 1060.1 597 92.6
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 7.1e-307 1056.6 597 93.1
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.2e-306 1055.8 597 92.3
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 7.9e-306 1053.1 597 92.1
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.3e-305 1052.4 597 92.1
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.5e-304 1048.9 598 92.0
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 3.7e-303 1044.3 599 91.8
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 2.0e-301 1038.5 599 91.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 8.4e-300 1033.1 599 91.0
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 4.2e-299 1030.8 596 91.8
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 2.8e-287 991.5 591 88.3
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.4e-270 936.0 593 82.6
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 8.6e-252 873.6 601 76.4
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 9.5e-251 870.2 595 77.1
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 8.0e-250 867.1 588 75.7
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 8.0e-250 867.1 596 76.7
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 1.4e-249 866.3 596 76.2
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 3.0e-249 865.1 602 75.7
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 3.0e-249 865.1 592 75.5
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 4.0e-249 864.8 596 77.0
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 5.2e-249 864.4 593 74.2
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 2.0e-248 862.4 595 75.6
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 3.4e-248 861.7 595 76.5
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 4.4e-248 861.3 592 75.3
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 1.3e-247 859.8 600 76.0
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.2e-247 859.0 592 77.2
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 2.2e-247 859.0 588 75.2
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 6.4e-247 857.4 590 74.9
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.1e-246 856.7 590 75.1
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 4.1e-246 854.7 591 76.6
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.4e-246 854.4 592 76.5
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 7.0e-246 854.0 595 75.8
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.0e-245 852.4 597 75.2
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 2.7e-245 852.0 592 76.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.7e-245 852.0 590 74.9
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.7e-245 852.0 589 75.4
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 3.5e-245 851.7 592 74.7
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 7.8e-245 850.5 589 73.9
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.0e-244 850.1 597 74.5
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.0e-244 850.1 590 76.1
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.0e-244 850.1 592 76.0
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.0e-244 850.1 591 74.5
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.0e-244 850.1 592 75.3
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.0e-244 848.6 592 74.8
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 3.9e-244 848.2 591 74.5
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 6.6e-244 847.4 591 74.6
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 6.6e-244 847.4 592 75.3
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 4.3e-243 844.7 592 74.7
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 7.3e-243 844.0 590 74.7
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 9.5e-243 843.6 602 73.8
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 2.1e-242 842.4 588 74.7
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.0e-241 840.1 595 74.8
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.8e-241 839.3 595 74.8
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 5.2e-241 837.8 594 73.9
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 5.2e-241 837.8 596 74.7
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 2.0e-240 835.9 602 73.9
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.6e-240 835.5 595 73.1
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 2.6e-240 835.5 602 73.4
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 3.4e-240 835.1 601 74.0
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 7.5e-240 833.9 604 73.2
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 2.9e-239 832.0 593 72.5
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 8.3e-239 830.5 591 72.4
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.1e-238 830.1 592 73.8
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 1.9e-238 829.3 594 73.2
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.6e-237 826.2 587 73.3
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.7e-236 822.8 595 73.1
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.3e-236 822.4 595 73.3
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 3.9e-236 821.6 606 71.5
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 6.6e-236 820.8 577 73.8
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 8.6e-236 820.5 628 70.7
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 7.3e-235 817.4 703 63.9
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.2e-234 816.6 563 75.0
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.6e-234 816.2 566 75.1
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 4.7e-234 814.7 595 71.1
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 6.2e-234 814.3 589 72.0
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 6.2e-234 814.3 591 72.6
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 8.1e-234 813.9 600 71.5
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 8.1e-234 813.9 591 72.4
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.4e-233 813.1 585 72.5
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 3.1e-233 812.0 591 72.4
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.5e-232 809.7 570 73.9
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 9.8e-232 807.0 509 79.8
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.9e-230 802.7 697 63.3
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 3.2e-230 802.0 593 71.7
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 3.2e-230 802.0 591 71.4
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.6e-229 799.7 596 71.1
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.0e-228 797.0 592 70.9
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.9e-227 792.7 593 71.3
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.9e-227 792.7 613 69.5
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.6e-226 788.5 568 73.6
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 5.8e-224 781.2 597 69.0
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 7.6e-224 780.8 594 70.0
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.4e-222 775.8 592 70.8
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 4.6e-221 771.5 592 70.1
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 4.6e-221 771.5 604 68.0
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.7e-220 769.6 595 67.2
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.5e-219 765.8 595 69.9
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.3e-219 765.4 595 67.2
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 7.3e-219 764.2 592 69.6
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 3.6e-218 761.9 596 66.9
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 2.4e-217 759.2 595 66.4
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 4.4e-216 755.0 605 67.8
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 4.9e-215 751.5 512 74.2
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.9e-211 739.6 578 68.2
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 1.9e-211 739.6 588 66.7
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.8e-210 735.7 593 67.6
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 3.1e-209 732.3 581 66.3
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 4.0e-209 731.9 587 66.8
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 2.5e-203 712.6 591 64.1
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.2e-197 693.7 600 63.2
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 7.9e-197 691.0 383 94.3
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.0e-192 676.4 585 63.8
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.9e-190 669.8 590 62.5
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 1.5e-187 660.2 372 93.0
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 5.0e-183 645.2 478 71.3
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 9.7e-179 630.9 450 72.0
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 6.1e-173 611.7 434 74.2
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.6e-168 596.3 479 65.1
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 3.0e-164 582.8 508 64.6
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 4.4e-163 578.9 537 59.2
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.2e-139 501.1 586 49.0
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.2e-136 491.1 573 52.9
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 6.4e-130 468.8 328 75.3
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.0e-120 437.2 401 61.6
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 3.4e-115 419.9 292 76.0
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.7e-114 417.5 252 83.7
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 3.5e-112 409.8 508 46.7
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 9.5e-110 401.7 315 67.9
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 4.3e-102 376.3 210 94.3
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 4.2e-97 359.8 567 42.0
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-79 302.0 229 70.7
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.5e-78 297.4 185 79.5
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 3.8e-66 256.9 257 53.3
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 2.6e-59 234.2 322 41.3
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 2.5e-49 201.1 129 78.3
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 4.2e-49 200.3 266 45.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 2.8e-37 161.0 130 63.8
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 5.2e-31 140.2 137 57.7
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 6.3e-29 133.3 83 88.0
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 2.6e-22 111.3 70 87.1
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 2.6e-22 111.3 70 87.1
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 4.4e-22 110.5 104 60.6
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 2.8e-21 107.8 70 84.3
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 9.2e-20 102.8 206 37.4
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 2.7e-19 101.3 102 57.8
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.7e-18 98.6 79 65.8
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.7e-18 98.6 79 65.8
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 1.7e-18 98.6 132 50.8
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.9e-18 97.8 50 86.0
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 1.6e-16 92.0 59 84.7
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.6e-14 84.7 52 84.6
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 3.4e-14 84.3 51 78.4
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 7.8e-11 73.2 59 61.0
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 9.5e-09 66.2 30 100.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 9.5e-09 66.2 30 100.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.1e-08 65.1 57 56.1
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 2.3e-07 61.6 244 29.1
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 5.8e-06 57.0 77 46.8


User provided reference genes

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