Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1975.7 1011 100.0
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1969.9 1011 99.7
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1963.0 1011 99.2
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1955.6 1011 98.8
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1878.2 1011 94.1
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1867.4 1012 94.1
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1866.3 1012 94.1
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1863.2 1012 93.7
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1860.5 1011 93.6
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1860.1 1012 93.5
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1842.4 1011 92.4
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1837.0 1011 92.1
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1830.1 1011 92.2
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1808.9 1011 90.2
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1727.2 1011 86.2
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1681.4 1001 88.5
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1668.7 1012 86.2
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1622.8 1013 79.9
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1617.8 1012 79.4
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1615.9 1010 79.5
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1608.6 1012 78.9
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1607.8 1012 79.1
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1603.6 1012 78.9
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1603.6 1012 78.9
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1601.3 1011 78.6
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1594.3 1010 78.5
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1593.2 1012 78.9
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1588.2 1015 78.3
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1585.9 1011 78.0
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1554.7 1009 75.8
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1554.7 1011 76.0
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1552.7 1011 76.0
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1550.0 1011 76.1
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1548.5 1012 77.0
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1548.1 835 93.2
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1545.0 1011 75.8
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1543.9 1012 75.7
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1540.8 1012 75.6
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1540.8 1011 75.8
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1540.0 1011 75.3
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1533.9 1011 74.9
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1533.5 1011 75.4
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1533.1 1009 75.2
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1531.5 1041 73.8
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1530.8 1011 75.0
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1529.6 1011 76.8
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1525.0 1010 75.0
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1523.1 1009 74.5
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1521.1 1009 74.8
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1519.6 1014 74.3
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1518.8 1014 74.1
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1507.7 1017 73.9
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1505.0 1009 73.9
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1503.0 1011 73.7
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1499.2 1014 73.9
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1496.5 1009 73.5
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1487.6 1011 72.0
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1483.8 1009 72.0
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1480.7 1073 70.1
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1472.6 1010 72.0
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1468.0 1016 71.0
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1464.5 1010 71.5
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1464.5 1080 69.1
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1464.1 1009 71.3
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1462.6 1024 70.8
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1459.5 1016 71.3
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1458.4 1015 71.7
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1458.4 1016 71.2
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1456.0 1012 71.9
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1456.0 1043 69.1
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1456.0 1010 71.3
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1454.9 1010 71.3
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1453.3 1010 71.6
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1453.3 1009 71.9
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1448.0 1012 72.2
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1443.7 914 78.4
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1442.6 1027 72.9
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1441.0 1001 71.5
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1431.8 914 76.9
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1431.0 1009 70.6
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1424.1 1147 64.7
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1416.7 1012 71.0
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1414.8 1070 67.9
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1413.3 994 71.1
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1402.9 1009 70.5
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1389.0 1092 67.1
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1368.6 1032 70.0
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1348.2 1017 67.2
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1338.6 896 73.2
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1296.6 1017 63.5
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1291.6 933 69.0
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1277.3 1018 63.4
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1255.0 1016 62.4
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1214.5 1015 60.4
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1170.2 863 70.1
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1156.7 964 59.9
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.4e-310 1069.7 882 59.4
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 1.2e-303 1046.6 823 65.5
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 2.4e-299 1032.3 1026 51.2
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 1.5e-288 996.5 1018 49.8
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 3.1e-286 988.8 1017 49.9
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 1.5e-285 986.5 611 77.3
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 3.4e-285 985.3 728 68.0
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 2.2e-284 982.6 611 76.8
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 9.3e-275 950.7 704 68.2
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 5.1e-265 918.3 991 48.6
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 3.6e-250 869.0 617 69.4
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 1.8e-249 866.7 1043 44.4
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 2.5e-243 846.3 536 76.5
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 4.8e-239 832.0 508 78.7
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 8.2e-239 831.2 508 78.9
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.5e-232 810.4 507 76.7
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 3.0e-225 786.2 1022 42.8
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 1.6e-218 763.8 504 77.4
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 1.5e-203 714.1 1017 42.1
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 3.3e-179 633.3 496 66.3
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 1.2e-157 561.6 393 73.3
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.4e-142 511.5 546 51.1
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 2.9e-127 460.7 389 61.4
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 1.5e-126 458.4 1046 31.0
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 7.2e-126 456.1 409 57.2
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 8.8e-124 449.1 404 56.7
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 3.4e-115 420.6 311 68.8
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 1.8e-113 414.8 304 67.8
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 3.8e-111 407.1 385 58.7
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 9.8e-107 392.5 1167 27.5
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 7.8e-104 382.9 469 48.8
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 2.6e-99 367.9 280 67.9
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 4.0e-84 317.4 303 51.2
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 2.2e-82 311.6 222 71.2
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-72 277.7 290 46.9
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 8.7e-71 273.1 213 60.1
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 5.8e-67 260.4 216 65.3
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 2.8e-61 241.5 141 80.9
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 6.9e-52 210.3 177 59.3
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 1.4e-44 186.0 126 76.2
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 3.4e-43 181.4 129 70.5
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 1.3e-37 162.9 134 65.7
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 2.3e-31 142.1 183 43.7
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 5.7e-30 137.5 178 44.9
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 8.2e-29 133.7 88 75.0
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 2.0e-27 129.0 97 63.9
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 3.4e-27 128.3 79 81.0
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 3.8e-26 124.8 91 63.7
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 4.2e-25 121.3 80 76.2
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 3.6e-24 118.2 78 75.6
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 1.4e-23 116.3 76 67.1
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 4.1e-20 104.8 66 81.8
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 4.5e-19 101.3 91 62.6
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 1.2e-16 93.2 121 45.5
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-14 85.9 98 44.9
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 4.4e-14 84.7 76 55.3
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 1.3e-13 83.2 47 85.1
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 2.2e-13 82.4 821 22.3
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 4.8e-13 81.3 123 38.2
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 2.4e-12 79.0 57 59.6
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 5.3e-12 77.8 125 37.6
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 2.0e-11 75.9 125 36.8
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 5.9e-11 74.3 47 78.7
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 7.7e-11 73.9 44 72.7
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 7.7e-11 73.9 125 37.6
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 2.2e-10 72.4 127 37.0
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 3.8e-10 71.6 559 21.8
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 8.5e-10 70.5 130 35.4
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 1.9e-09 69.3 135 30.4
Cfa026283 Carpinus fangiana HOM05D002786 ORTHO05D003493 2.1e-08 65.9 141 27.0
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 2.7e-08 65.5 142 31.0
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.8e-07 62.8 47 53.2
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis HOM05D002786 ORTHO05D003493 3.0e-07 62.0 152 28.3
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 3.0e-07 62.0 134 29.1
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 4.0e-07 61.6 129 34.1
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 4.0e-07 61.6 129 34.1
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 4.0e-07 61.6 129 34.1
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 5.2e-07 61.2 38 73.7
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 8.8e-07 60.5 142 26.8
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 1.2e-06 60.1 151 27.8
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 1.5e-06 59.7 129 30.2
PRCOL_00001712 Prasinoderma coloniale HOM05D003602 ORTHO05D004808 7.5e-06 57.4 143 25.2


User provided reference genes

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