Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 8.1e-114 414.1 260 100.0
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 3.4e-112 408.7 260 98.8
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 3.9e-108 395.2 260 95.8
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 3.9e-108 395.2 260 95.8
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 4.0e-105 385.2 260 93.5
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 4.8e-98 361.7 260 89.2
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 2.4e-94 349.4 260 85.0
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 1.2e-93 347.1 260 81.5
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 3.5e-93 345.5 260 87.7
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 5.6e-91 338.2 261 83.1
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 1.3e-90 337.0 254 84.6
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.6e-90 336.7 260 84.2
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 1.8e-89 333.2 260 75.0
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 2.0e-88 329.7 261 82.4
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 4.2e-86 322.0 259 69.5
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 6.0e-85 318.2 278 76.3
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 2.7e-69 266.2 278 59.4
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 1.5e-67 260.4 257 68.9
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 1.3e-58 230.7 252 57.5
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 2.4e-57 226.5 262 51.5
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 5.3e-57 225.3 251 64.1
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 1.5e-56 223.8 259 59.8
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 1.3e-55 220.7 247 63.6
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 3.8e-55 219.2 247 61.1
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 1.6e-53 213.8 260 57.3
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 3.6e-53 212.6 248 60.5
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 7.9e-53 211.5 248 60.1
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.4e-52 210.7 262 51.5
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.5e-51 207.2 252 58.7
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 2.0e-51 206.8 249 51.8
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 3.3e-51 206.1 238 51.3
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.3e-50 204.1 256 48.0
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 1.7e-50 203.8 246 63.8
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.8e-50 203.0 250 47.6
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 4.8e-50 202.2 258 60.9
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 4.8e-50 202.2 258 60.9
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.8e-49 200.3 216 51.4
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 1.8e-49 200.3 248 58.1
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 2.4e-49 199.9 248 57.7
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 3.1e-49 199.5 240 56.2
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 4.1e-49 199.1 249 51.4
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 5.3e-49 198.7 194 65.5
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 7.0e-49 198.4 249 51.4
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 1.2e-48 197.6 247 54.7
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 2.6e-48 196.4 247 48.2
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 4.5e-48 195.7 249 55.4
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 4.5e-48 195.7 262 58.0
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 4.5e-48 195.7 253 60.1
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.3e-47 194.1 249 50.6
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 3.8e-47 192.6 259 57.1
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 3.8e-47 192.6 256 52.0
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 5.0e-47 192.2 256 60.2
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.5e-46 190.7 206 64.1
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 1.9e-46 190.3 265 48.7
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 1.9e-46 190.3 261 59.0
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 2.5e-46 189.9 252 48.8
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 9.4e-46 188.0 259 55.2
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 2.1e-45 186.8 262 46.9
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 4.7e-45 185.7 259 44.4
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 6.1e-45 185.3 251 55.8
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 3.0e-44 183.0 235 46.8
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 3.0e-44 183.0 218 59.6
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 3.0e-44 183.0 260 54.2
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 5.2e-44 182.2 221 61.1
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 6.7e-44 181.8 254 46.1
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 8.8e-44 181.4 251 57.0
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 8.8e-44 181.4 259 53.7
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.2e-43 181.0 254 53.9
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 2.6e-43 179.9 228 49.1
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.3e-42 177.6 254 50.8
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 1.7e-42 177.2 254 56.3
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 2.2e-42 176.8 255 46.7
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 4.8e-42 175.6 221 57.9
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 6.3e-42 175.3 256 52.7
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 8.2e-42 174.9 247 44.1
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 8.2e-42 174.9 262 55.3
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 2.4e-41 173.3 239 43.5
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 2.4e-41 173.3 233 45.9
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 3.1e-41 172.9 262 53.1
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 7.0e-41 171.8 228 50.0
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 7.0e-41 171.8 241 54.8
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 9.1e-41 171.4 233 46.8
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.7e-40 169.9 206 47.6
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 5.9e-40 168.7 233 45.1
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 5.9e-40 168.7 261 52.9
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.7e-39 167.2 275 50.2
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.2e-39 166.8 229 54.6
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.2e-39 166.8 257 56.0
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 2.9e-39 166.4 232 42.7
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 2.9e-39 166.4 233 44.6
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 6.5e-39 165.2 257 55.3
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 2.5e-38 163.3 256 54.3
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 4.2e-38 162.5 241 42.7
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 5.5e-38 162.2 254 49.2
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 7.2e-38 161.8 140 60.0
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 3.6e-37 159.5 256 49.2
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 4.7e-37 159.1 260 51.2
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 6.1e-37 158.7 265 50.9
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 1.4e-36 157.5 218 56.9
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 2.3e-36 156.8 206 44.7
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.3e-36 156.8 258 51.9
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 5.2e-36 155.6 230 53.5
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 8.8e-36 154.8 214 48.1
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 2.0e-35 153.7 248 48.8
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 9.8e-35 151.4 133 60.2
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 2.2e-34 150.2 204 50.0
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 4.8e-34 149.1 251 41.0
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 6.3e-34 148.7 251 41.0
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.8e-33 147.1 206 42.7
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 7.0e-33 145.2 213 49.3
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 4.5e-32 142.5 126 57.9
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 1.5e-30 137.5 248 52.4
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.5e-30 137.5 129 55.8
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 4.2e-30 136.0 210 55.2
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.8e-28 130.6 166 45.2
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 1.8e-28 130.6 247 47.4
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 1.3e-26 124.4 181 54.1
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 1.7e-26 124.0 135 51.9
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.6e-24 117.5 130 50.8
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 4.5e-24 115.9 181 48.6
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 2.0e-19 100.5 200 32.5
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 8.3e-18 95.1 203 29.6
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 3.2e-17 93.2 209 32.1
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 7.0e-17 92.0 200 28.0
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 4.6e-16 89.4 203 30.0
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 5.0e-15 85.9 97 47.4
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.5e-14 84.3 181 29.3
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 6.2e-13 79.0 79 49.4
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 8.0e-13 78.6 83 49.4
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 6.4e-10 68.9 90 47.8
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 6.4e-10 68.9 211 27.5
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 1.9e-09 67.4 91 44.0
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 2.7e-08 63.5 231 26.0
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.3e-07 61.2 205 26.3


User provided reference genes

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