Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 2073.1 1072 100.0
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 2070.8 1072 99.8
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1987.2 1072 96.5
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1929.5 1072 93.0
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1909.4 1072 94.1
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1896.3 1092 90.2
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1895.9 1092 90.2
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1882.1 1072 91.3
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1872.8 1073 91.0
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1866.7 1055 91.8
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1862.0 1072 89.8
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1860.1 1078 89.9
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1859.7 1072 90.1
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1849.7 1073 89.8
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1842.8 1078 89.4
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1836.6 1078 89.1
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1812.0 1078 88.1
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1798.9 1066 88.3
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1786.2 1078 87.1
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1733.0 1073 83.6
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1714.1 1066 85.3
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1521.1 1085 73.7
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1520.4 1102 72.6
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1518.1 1084 73.5
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1514.2 1086 73.7
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1509.6 1093 72.3
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1506.5 1092 72.6
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1505.0 1086 72.4
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1501.5 1086 72.4
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1500.3 1093 72.6
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1497.3 1092 71.9
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1495.3 1097 71.5
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1491.1 1087 72.6
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1486.9 1090 71.6
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1486.1 1087 71.8
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1485.7 1099 72.2
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1483.8 1087 72.1
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1479.5 1083 71.2
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1478.8 1087 71.7
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1476.8 1087 72.0
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1476.8 1093 71.0
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1473.4 1095 70.6
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1472.2 1086 71.8
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1465.3 1088 71.0
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1463.7 1082 71.9
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1462.6 1085 70.1
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1462.6 1088 70.5
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1459.1 1093 71.3
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1456.4 1087 71.2
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1454.5 1057 72.5
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1453.0 1087 70.5
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1452.6 1040 73.7
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1449.5 1087 70.7
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1449.5 1087 70.5
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1449.5 1088 69.9
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1447.6 1095 69.5
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1444.5 1080 71.1
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1441.8 1096 69.0
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1441.8 1087 70.5
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1435.2 1081 70.1
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1434.1 1084 69.9
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1433.7 1081 69.9
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1433.7 1089 69.3
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1429.5 1093 69.4
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1427.9 1084 69.6
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1421.4 1089 69.0
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1417.9 1150 67.0
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1412.9 1096 68.2
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1397.9 1085 68.3
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1396.7 1093 67.8
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1392.5 1080 69.5
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1387.1 1103 67.8
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1382.9 1095 67.4
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1379.4 1094 66.7
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1372.5 1093 66.8
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1339.7 1085 66.0
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1325.8 1109 64.7
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1317.8 1083 65.1
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1315.8 1003 70.3
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1312.4 1193 62.4
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1309.3 1085 64.6
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1298.9 1150 63.6
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1297.7 1086 64.3
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1291.2 1089 64.8
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1285.8 1112 63.8
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1283.9 1153 62.8
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1282.3 1084 64.9
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1280.8 1088 63.6
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1276.5 1018 68.2
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1272.3 1103 63.3
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1266.1 962 69.3
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1252.7 1044 65.7
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1241.5 1100 61.0
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1226.5 1086 59.9
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1219.9 1184 60.0
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1213.7 1061 63.0
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1206.4 1085 61.2
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1201.0 1084 59.3
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1192.2 1085 58.9
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1184.1 1035 61.8
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1171.0 1070 61.1
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1155.2 1071 60.8
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1113.6 1078 58.9
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1110.1 881 67.2
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1107.0 1261 52.3
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1083.2 570 98.8
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.2e-306 1055.8 754 73.5
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 8.6e-303 1043.9 919 61.5
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.7e-295 1019.6 919 61.7
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.8e-276 956.4 1098 48.7
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 3.1e-276 955.7 728 71.0
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 2.0e-275 953.0 1096 49.0
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.3e-274 950.3 972 57.1
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 5.3e-252 875.2 1091 46.0
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 4.9e-250 868.6 643 72.2
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.6e-248 863.6 841 57.6
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 3.1e-236 822.8 1058 45.4
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.7e-232 809.7 1094 43.4
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 2.5e-230 803.1 417 98.8
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.1e-220 769.6 776 58.8
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 7.5e-206 721.8 567 68.1
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 4.1e-204 716.1 580 67.1
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 6.1e-200 702.2 516 70.7
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 7.0e-196 688.7 577 65.5
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 2.9e-186 656.8 717 53.0
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 1.0e-178 631.7 1230 34.4
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 1.5e-174 617.8 825 44.7
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 5.8e-174 615.9 528 64.0
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.5e-169 601.3 846 46.1
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 3.0e-154 550.4 388 73.7
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.2e-139 501.9 374 71.1
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 2.0e-126 458.0 346 68.8
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 1.2e-118 432.2 346 67.6
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.1e-116 425.6 402 58.5
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 7.2e-116 422.9 359 64.1
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 9.4e-116 422.5 320 71.9
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 6.5e-109 399.8 366 60.9
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 2.5e-100 371.3 275 69.5
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 4.4e-97 360.5 308 65.3
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.8e-88 331.3 365 51.5
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 3.7e-88 330.9 186 90.3
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 2.2e-80 305.1 228 68.0
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 1.1e-63 249.6 176 71.6
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 4.4e-57 227.6 143 76.2
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.4e-55 220.7 162 64.8
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 2.8e-51 208.4 139 72.7
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 4.4e-49 201.1 130 79.2
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 8.4e-48 196.8 139 69.1
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 5.4e-47 194.1 103 92.2
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.7e-45 189.1 108 85.2
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 3.5e-38 164.9 114 71.1
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.3e-32 146.4 85 81.2
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 3.8e-32 144.8 111 65.8
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 3.2e-31 141.7 177 49.7
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 2.7e-30 138.7 86 73.3
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 4.6e-30 137.9 87 72.4
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.9e-28 132.5 182 46.7
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.3e-28 131.7 84 76.2
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-25 123.2 92 67.4
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 2.6e-25 122.1 204 32.8
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 7.6e-25 120.6 79 67.1
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.3e-24 119.8 98 65.3
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 2.2e-24 119.0 111 59.5
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 2.2e-24 119.0 79 69.6
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.8e-19 102.1 86 64.0
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 1.8e-18 99.4 81 59.3
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 3.4e-17 95.1 100 52.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-15 90.1 84 54.8
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-15 90.1 84 54.8
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.0e-14 84.3 61 65.6
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.0e-14 84.3 61 65.6
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 3.3e-12 78.6 53 79.2
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 4.3e-12 78.2 49 75.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 3.7e-11 75.1 71 54.9
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 6.9e-10 70.9 58 62.1
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 5.9e-09 67.8 48 68.8
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 1.7e-08 66.2 61 63.9
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 5.0e-08 64.7 52 55.8


User provided reference genes

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