Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34419H Brassica oleracea HOM05D003679 ORTHO05D004265 1.6e-100 369.4 183 100.0
C05p57620 Brassica napus HOM05D003679 ORTHO05D004265 6.1e-100 367.5 182 100.0
BcaC05g29463 Brassica carinata HOM05D003679 ORTHO05D004265 1.3e-81 306.6 167 93.4
BcaC03g15292 Brassica carinata HOM05D003679 ORTHO05D004265 3.0e-46 189.1 275 46.5
A02p17340 Brassica napus HOM05D003679 ORTHO05D004265 3.9e-46 188.7 276 46.4
C02p28990 Brassica napus HOM05D003679 ORTHO05D004265 3.9e-46 188.7 276 46.4
BraA02t06781Z Brassica rapa HOM05D003679 ORTHO05D004265 3.9e-46 188.7 276 46.4
A07p37690 Brassica napus HOM05D003679 ORTHO05D004265 1.1e-45 187.2 275 45.8
Sp5g26570 Schrenkiella parvula HOM05D003679 ORTHO05D004265 1.5e-45 186.8 275 45.8
BraA07t31333Z Brassica rapa HOM05D003679 ORTHO05D004265 1.9e-45 186.4 276 45.7
Thhalv10018097m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 3.3e-45 185.7 275 45.8
C06p45570 Brassica napus HOM05D003679 ORTHO05D004265 1.6e-44 183.3 275 45.1
BolC6t39608H Brassica oleracea HOM05D003679 ORTHO05D004265 1.6e-44 183.3 275 45.1
BolC2t08949H Brassica oleracea HOM05D003679 ORTHO05D004265 2.8e-44 182.6 276 44.9
BcaB05g24669 Brassica carinata HOM05D003679 ORTHO05D004265 3.6e-44 182.2 275 45.8
Carub.0002s1826 Capsella rubella HOM05D003679 ORTHO05D004265 3.6e-44 182.2 272 45.2
AL2G31070 Arabidopsis lyrata HOM05D003679 ORTHO05D004265 6.2e-44 181.4 270 45.2
AT1G71410 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 8.1e-44 181.0 275 44.7
CARHR291300 Cardamine hirsuta HOM05D003679 ORTHO05D004265 8.1e-44 181.0 275 44.7
BcaC05g26193 Brassica carinata HOM05D003679 ORTHO05D004265 1.1e-43 180.6 254 44.9
Carub.0001s2237 Capsella rubella HOM05D003679 ORTHO05D004265 4.0e-43 178.7 275 43.3
BcaB07g32282 Brassica carinata HOM05D003679 ORTHO05D004265 5.8e-42 174.9 275 42.5
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 1.3e-41 173.7 275 41.8
BraA09t39677Z Brassica rapa HOM05D003679 ORTHO05D004265 1.3e-41 173.7 275 41.8
A09p41890 Brassica napus HOM05D003679 ORTHO05D004265 1.7e-41 173.3 276 41.7
Thhalv10006737m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 2.2e-41 172.9 275 42.2
Aa31LG7G6860 Aethionema arabicum HOM05D003679 ORTHO05D004265 2.9e-41 172.6 272 43.0
C05p21960 Brassica napus HOM05D003679 ORTHO05D004265 2.9e-41 172.6 275 41.5
Sp1g20350 Schrenkiella parvula HOM05D003679 ORTHO05D004265 3.8e-41 172.2 275 42.2
AT1G22870 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 6.4e-41 171.4 275 41.8
CARHR023220 Cardamine hirsuta HOM05D003679 ORTHO05D004265 8.4e-41 171.0 275 42.2
Cfa008063 Carpinus fangiana HOM05D003679 ORTHO05D004265 3.2e-40 169.1 232 43.1
THA.LOC104809755 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 3.5e-39 165.6 270 41.1
THA.LOC104800081 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 7.8e-39 164.5 270 41.1
Aa31LG4G9170 Aethionema arabicum HOM05D003679 ORTHO05D004265 1.0e-38 164.1 275 40.7
BcaNung06593 Brassica carinata HOM05D003679 ORTHO05D004265 2.4e-35 152.9 271 38.7
QL09p001735 Quercus lobata HOM05D003679 ORTHO05D004265 6.9e-35 151.4 270 36.3
Thecc.08G179800 Theobroma cacao HOM05D003679 ORTHO05D004265 2.6e-34 149.4 270 37.0
Nitab4.5_0001430g0030 Nicotiana tabacum HOM05D003679 ORTHO05D004265 4.5e-34 148.7 245 38.4
PSO063G5029 Papaver somniferum HOM05D003679 ORTHO05D004265 4.5e-34 148.7 270 36.3
PSO782G1226 Papaver somniferum HOM05D003679 ORTHO05D004265 4.5e-34 148.7 270 36.3
Gohir.A05G275400 Gossypium hirsutum HOM05D003679 ORTHO05D004265 5.8e-34 148.3 270 37.0
Dinv37407 Davidia involucrata HOM05D003679 ORTHO05D004265 9.9e-34 147.5 270 36.3
Lalb_Chr19g0131861 Lupinus albus HOM05D003679 ORTHO05D004265 1.3e-33 147.1 270 37.0
Manes.02G207300 Manihot esculenta HOM05D003679 ORTHO05D004265 1.3e-33 147.1 275 36.0
GSVIVG01037227001 Vitis vinifera HOM05D003679 ORTHO05D004265 1.7e-33 146.7 270 37.0
CiPaw.03G013700 Carya illinoinensis HOM05D003679 ORTHO05D004265 2.2e-33 146.4 270 37.0
Gorai.009G290500 Gossypium raimondii HOM05D003679 ORTHO05D004265 2.2e-33 146.4 270 36.7
Ca_19809_v3 Cicer arietinum L. HOM05D003679 ORTHO05D004265 3.8e-33 145.6 270 35.2
Medtr4g030910 Medicago truncatula HOM05D003679 ORTHO05D004265 3.8e-33 145.6 270 35.6
Psat7g228040 Pisum sativum HOM05D003679 ORTHO05D004265 3.8e-33 145.6 275 35.3
PGR004G0725 Punica granatum HOM05D003679 ORTHO05D004265 3.8e-33 145.6 270 36.7
Gohir.D05G277500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 4.9e-33 145.2 270 36.3
Nn1g04396 Nelumbo nucifera HOM05D003679 ORTHO05D004265 6.4e-33 144.8 270 37.8
Eucgr.F04075 Eucalyptus grandis HOM05D003679 ORTHO05D004265 8.4e-33 144.4 272 36.4
Manes.18G113450 Manihot esculenta HOM05D003679 ORTHO05D004265 8.4e-33 144.4 231 41.6
SGA_v2.0_scaffold118G32618 Striga asiatica HOM05D003679 ORTHO05D004265 8.4e-33 144.4 270 35.2
TAR629G3435 Trochodendron aralioides HOM05D003679 ORTHO05D004265 8.4e-33 144.4 270 36.3
Cpa.g.sc21.95 Carica papaya HOM05D003679 ORTHO05D004265 1.1e-32 144.1 267 37.1
Lalb_Chr03g0033781 Lupinus albus HOM05D003679 ORTHO05D004265 1.1e-32 144.1 270 36.7
COL.COLO4_25139 Corchorus olitorius HOM05D003679 ORTHO05D004265 1.4e-32 143.7 270 36.3
Dinv22115 Davidia involucrata HOM05D003679 ORTHO05D004265 1.4e-32 143.7 275 35.3
VMungo1127G1022 Vigna mungo HOM05D003679 ORTHO05D004265 1.4e-32 143.7 270 36.7
MSTRG.25498 Avicennia marina HOM05D003679 ORTHO05D004265 1.9e-32 143.3 280 33.9
Phvul.011G216200 Phaseolus vulgaris HOM05D003679 ORTHO05D004265 1.9e-32 143.3 270 36.3
Ciclev10018760m.g Citrus clementina HOM05D003679 ORTHO05D004265 2.4e-32 142.9 270 37.0
Glyma.09G002400 Glycine max HOM05D003679 ORTHO05D004265 2.4e-32 142.9 270 35.6
Rhsim02G0172900 Rhododendron simsii HOM05D003679 ORTHO05D004265 2.4e-32 142.9 270 36.3
DCAR_003511 Daucus carota HOM05D003679 ORTHO05D004265 3.2e-32 142.5 275 35.6
Glyma.12G241900 Glycine max HOM05D003679 ORTHO05D004265 3.2e-32 142.5 270 35.9
Lj3g0002271 Lotus japonicus HOM05D003679 ORTHO05D004265 3.2e-32 142.5 269 35.7
TPR.G34140 Trifolium pratense HOM05D003679 ORTHO05D004265 4.2e-32 142.1 270 34.4
Hma1.2p1_0016F.1_g010780 Hydrangea macrophylla HOM05D003679 ORTHO05D004265 5.4e-32 141.7 271 36.2
Actinidia29376 Actinidia chinensis HOM05D003679 ORTHO05D004265 9.3e-32 141.0 270 35.6
CSS0010343 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 9.3e-32 141.0 270 35.9
CSS0038034 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 9.3e-32 141.0 270 35.9
ClCG08G000780 Citrullus lanatus HOM05D003679 ORTHO05D004265 9.3e-32 141.0 270 35.6
Migut.C01386 Erythranthe guttata HOM05D003679 ORTHO05D004265 9.3e-32 141.0 270 34.4
TWI18G1229 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 9.3e-32 141.0 270 34.8
Actinidia03530 Actinidia chinensis HOM05D003679 ORTHO05D004265 1.2e-31 140.6 270 35.6
FAN06G3813 Fragaria x ananassa HOM05D003679 ORTHO05D004265 1.2e-31 140.6 275 34.9
Sed0026343 Sechium edule HOM05D003679 ORTHO05D004265 1.6e-31 140.2 270 35.6
Nitab4.5_0000213g0040 Nicotiana tabacum HOM05D003679 ORTHO05D004265 2.1e-31 139.8 274 34.7
arahy.Tifrunner.gnm1.ann1.59G37Z Arachis hypogaea HOM05D003679 ORTHO05D004265 2.7e-31 139.4 270 34.8
Lj7C418G9 Lonicera japonica HOM05D003679 ORTHO05D004265 2.7e-31 139.4 289 34.3
MBI07_g03169_MAGBIO Magnolia biondii HOM05D003679 ORTHO05D004265 2.7e-31 139.4 270 35.2
Solyc11g042990.2 Solanum lycopersicum HOM05D003679 ORTHO05D004265 2.7e-31 139.4 270 34.8
Lsat_1_v5_gn_1_1441 Lactuca sativa HOM05D003679 ORTHO05D004265 3.5e-31 139.0 270 34.4
MD05G1002800 Malus domestica HOM05D003679 ORTHO05D004265 3.5e-31 139.0 270 34.4
FAN06G3180 Fragaria x ananassa HOM05D003679 ORTHO05D004265 4.6e-31 138.7 267 35.2
RcHm_v2.0_Chr6g0251091 Rosa chinensis HOM05D003679 ORTHO05D004265 4.6e-31 138.7 270 34.8
arahy.Tifrunner.gnm1.ann1.AU4LT2 Arachis hypogaea HOM05D003679 ORTHO05D004265 6.0e-31 138.3 270 34.8
MELO3C022164.2 Cucumis melo HOM05D003679 ORTHO05D004265 6.0e-31 138.3 280 34.3
CsaV3_5G039850 Cucumis sativus L. HOM05D003679 ORTHO05D004265 6.0e-31 138.3 270 34.8
Peaxi162Scf00078g00824 Petunia axillaris HOM05D003679 ORTHO05D004265 6.0e-31 138.3 278 34.2
Prupe.8G006100 Prunus persica HOM05D003679 ORTHO05D004265 1.0e-30 137.5 270 34.4
Sopen11g019340 Solanum pennellii HOM05D003679 ORTHO05D004265 1.0e-30 137.5 270 34.4
FAN20G2916 Fragaria x ananassa HOM05D003679 ORTHO05D004265 1.3e-30 137.1 270 34.1
MSTRG.1602 Avicennia marina HOM05D003679 ORTHO05D004265 2.3e-30 136.3 270 34.1
CAN.G43.11 Capsicum annuum HOM05D003679 ORTHO05D004265 2.3e-30 136.3 270 33.7
HPP92_006341 Vanilla planifolia HOM05D003679 ORTHO05D004265 2.3e-30 136.3 273 34.4
Aqoxy4G00374 Aquilegia oxysepala HOM05D003679 ORTHO05D004265 3.0e-30 136.0 270 34.8
Gohir.A05G249800 Gossypium hirsutum HOM05D003679 ORTHO05D004265 3.0e-30 136.0 270 34.8
CDE09G1378 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 3.9e-30 135.6 270 34.1
FvH4_2g00710 Fragaria vesca HOM05D003679 ORTHO05D004265 3.9e-30 135.6 270 34.4
Gorai.009G262900 Gossypium raimondii HOM05D003679 ORTHO05D004265 3.9e-30 135.6 270 35.6
SalBow7G3862 Salvia bowleyana HOM05D003679 ORTHO05D004265 3.9e-30 135.6 269 33.5
Cc10_g16340 Coffea canephora HOM05D003679 ORTHO05D004265 5.1e-30 135.2 270 34.1
FAN24G0047 Fragaria x ananassa HOM05D003679 ORTHO05D004265 5.1e-30 135.2 270 34.1
TWI12G0838 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 5.1e-30 135.2 270 33.7
CDE02G0262 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 6.7e-30 134.8 270 34.1
Potri.013G098700 Populus trichocarpa HOM05D003679 ORTHO05D004265 6.7e-30 134.8 270 34.8
Sc23g0000050 Simmondsia chinensis HOM05D003679 ORTHO05D004265 8.7e-30 134.4 275 34.9
AUR62038539 Chenopodium quinoa HOM05D003679 ORTHO05D004265 1.9e-29 133.3 262 35.9
FAN27G2038 Fragaria x ananassa HOM05D003679 ORTHO05D004265 2.5e-29 132.9 270 33.7
Gohir.D05G251500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 2.5e-29 132.9 270 35.2
Gohir.A08G230600 Gossypium hirsutum HOM05D003679 ORTHO05D004265 3.3e-29 132.5 277 33.2
HanXRQChr10g0298581 Helianthus annuus HOM05D003679 ORTHO05D004265 3.3e-29 132.5 270 34.1
Zm00001eb162090 Zea mays HOM05D003679 ORTHO05D004265 5.6e-29 131.7 270 33.0
ECA247G4018 Erigeron canadensis HOM05D003679 ORTHO05D004265 9.6e-29 131.0 270 33.3
AUR62013388 Chenopodium quinoa HOM05D003679 ORTHO05D004265 1.6e-28 130.2 270 34.8
MD10G1003500 Malus domestica HOM05D003679 ORTHO05D004265 1.6e-28 130.2 270 32.6
Hund03114 Selenicereus undatus HOM05D003679 ORTHO05D004265 1.6e-28 130.2 270 34.1
Gorai.004G267700 Gossypium raimondii HOM05D003679 ORTHO05D004265 4.8e-28 128.6 277 32.9
EL10Ac1g01279 Beta vulgaris HOM05D003679 ORTHO05D004265 6.2e-28 128.3 270 34.8
ATR0602G033 Amborella trichopoda HOM05D003679 ORTHO05D004265 8.1e-28 127.9 270 33.7
Gohir.D08G251000 Gossypium hirsutum HOM05D003679 ORTHO05D004265 8.1e-28 127.9 277 32.5
Os01g0616100 Oryza sativa ssp. japonica HOM05D003679 ORTHO05D004265 2.4e-27 126.3 270 32.2
Zm00001eb358200 Zea mays HOM05D003679 ORTHO05D004265 4.0e-27 125.6 269 32.0
unitig_37.g13075 Utricularia gibba HOM05D003679 ORTHO05D004265 1.5e-26 123.6 285 30.5
Oeu028929.2 Olea europaea HOM05D003679 ORTHO05D004265 6.4e-25 118.2 311 29.6
Sabra13G0083300 Salix brachista HOM05D003679 ORTHO05D004265 8.4e-25 117.9 322 29.8
Sabra13G0084600 Salix brachista HOM05D003679 ORTHO05D004265 8.4e-25 117.9 322 29.8
Psat0s2790g0080 Pisum sativum HOM05D003679 ORTHO05D004265 1.4e-24 117.1 271 31.7
Lj9C697G2 Lonicera japonica HOM05D003679 ORTHO05D004265 1.2e-23 114.0 302 29.8
Haze_13962 Corylus avellana HOM05D003679 ORTHO05D004265 1.3e-22 110.5 168 45.8
Oeu028634.1 Olea europaea HOM05D003679 ORTHO05D004265 3.0e-22 109.4 288 30.9
vmacro11031 Vaccinium macrocarpon HOM05D003679 ORTHO05D004265 1.1e-21 107.5 88 61.4
SGA_v2.0_scaffold24G10654 Striga asiatica HOM05D003679 ORTHO05D004265 2.5e-21 106.3 76 65.8
Ah.05g170420 Amaranthus hybridus HOM05D003679 ORTHO05D004265 3.3e-21 105.9 318 28.3
Duzib177G0004 Durio zibethinus HOM05D003679 ORTHO05D004265 3.3e-21 105.9 88 59.1
Atru.chr13.2527 Acer truncatum HOM05D003679 ORTHO05D004265 4.3e-21 105.5 67 73.1
Psat0s2790g0120 Pisum sativum HOM05D003679 ORTHO05D004265 1.6e-20 103.6 162 43.2
Nn1g09907 Nelumbo nucifera HOM05D003679 ORTHO05D004265 4.0e-19 99.0 67 70.1
SHI16836 Sapria himalayana HOM05D003679 ORTHO05D004265 1.2e-18 97.4 90 55.6
SEGI_13301 Sequoiadendron giganteum HOM05D003679 ORTHO05D004265 5.8e-18 95.1 88 54.5
SMO361G0595 Selaginella moellendorffii HOM05D003679 ORTHO05D004265 1.0e-17 94.4 269 27.5
SEGI_07550 Sequoiadendron giganteum HOM05D003679 ORTHO05D004265 2.2e-17 93.2 90 55.6
BcaB03g14900 Brassica carinata HOM05D003679 ORTHO05D004265 1.1e-16 90.9 46 97.8
Cc02_g28270 Coffea canephora HOM05D003679 ORTHO05D004265 1.4e-16 90.5 108 48.1
BcaC08g46576 Brassica carinata HOM05D003679 ORTHO05D004265 1.9e-16 90.1 46 97.8
Oeu028633.1 Olea europaea HOM05D003679 ORTHO05D004265 2.1e-15 86.7 85 51.8
Mapoly0061s0106 Marchantia polymorpha HOM05D003679 ORTHO05D004265 2.7e-15 86.3 270 26.3
Oeu028930.1 Olea europaea HOM05D003679 ORTHO05D004265 1.8e-14 83.6 85 50.6
SHI16839 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-12 76.6 83 45.8
Pp3c9_3750 Physcomitrium patens HOM05D003679 ORTHO05D004265 1.8e-11 73.6 270 23.7
Pp3c15_10870 Physcomitrium patens HOM05D003679 ORTHO05D004265 3.1e-11 72.8 270 23.0
Nn1g09117 Nelumbo nucifera HOM05D003679 ORTHO05D004265 3.8e-09 65.9 46 67.4
CBR_g8679 Chara braunii HOM05D003679 ORTHO05D004265 5.5e-08 62.0 85 36.5
vmacro11032 Vaccinium macrocarpon HOM05D003679 ORTHO05D004265 7.2e-08 61.6 40 72.5
CBR_g22378 Chara braunii HOM05D003679 ORTHO05D004265 2.1e-07 60.1 85 35.3
CBR_g30330 Chara braunii HOM05D003679 ORTHO05D004265 2.1e-07 60.1 87 39.1


User provided reference genes

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