Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 0.0e+00 1114.4 582 100.0
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 0.0e+00 1112.1 582 99.8
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 0.0e+00 1112.1 582 99.8
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 1.6e-303 1045.4 585 94.4
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 1.6e-303 1045.4 585 94.4
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.1e-291 1006.1 584 90.9
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.6e-266 922.5 597 80.9
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.4e-251 872.8 597 78.2
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.3e-249 866.3 601 76.0
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 8.7e-233 810.4 598 73.4
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.4e-206 723.4 627 63.2
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.0e-204 717.2 642 61.8
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.7e-204 716.5 610 61.3
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 6.1e-202 708.0 628 61.3
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 3.0e-201 705.7 621 62.5
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.5e-200 702.6 636 60.8
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 3.4e-197 692.2 606 62.5
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 1.1e-195 687.2 603 62.4
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 5.5e-195 684.9 604 62.3
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 4.4e-192 675.2 588 61.9
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 3.7e-191 672.2 641 58.7
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 6.5e-188 661.4 604 60.4
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 5.9e-181 638.3 572 61.4
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 8.5e-180 634.4 450 75.3
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 7.0e-174 614.8 632 52.2
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 9.1e-174 614.4 625 52.2
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 3.5e-173 612.5 632 51.9
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.2e-171 605.5 620 51.3
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.0e-169 600.9 618 53.7
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 2.3e-169 599.7 609 53.0
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 2.8e-167 592.8 622 52.4
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 2.8e-167 592.8 619 51.4
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 8.3e-167 591.3 625 51.4
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 1.1e-166 590.9 632 50.9
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.1e-166 590.9 632 52.2
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 3.1e-166 589.3 632 51.3
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 3.1e-166 589.3 630 51.3
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 4.1e-166 589.0 629 50.4
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 5.4e-166 588.6 623 51.8
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.0e-165 586.6 624 51.3
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 2.0e-165 586.6 627 51.7
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 5.9e-165 585.1 614 50.3
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.2e-164 583.2 631 50.4
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 7.2e-163 578.2 638 50.3
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 7.2e-163 578.2 633 50.1
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.2e-162 577.4 628 51.0
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 4.7e-162 575.5 632 50.5
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 8.0e-162 574.7 624 48.7
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 4.0e-161 572.4 626 49.8
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 5.2e-161 572.0 612 50.3
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 5.2e-161 572.0 628 50.5
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 6.8e-161 571.6 624 49.2
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 8.8e-161 571.2 594 52.2
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.2e-160 570.9 667 48.1
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 7.5e-160 568.2 613 51.1
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 1.3e-159 567.4 624 52.1
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 1.7e-159 567.0 617 50.2
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.7e-159 567.0 630 49.7
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 6.3e-159 565.1 632 50.2
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 6.3e-159 565.1 632 48.6
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 8.3e-159 564.7 600 50.3
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.4e-158 563.1 629 49.0
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.4e-158 563.1 575 52.3
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.4e-158 563.1 665 47.8
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 2.4e-158 563.1 627 48.3
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 1.2e-157 560.8 621 47.8
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 2.7e-157 559.7 628 48.4
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 3.5e-157 559.3 628 49.7
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.3e-156 557.4 636 50.3
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 1.7e-156 557.0 630 49.8
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 2.3e-156 556.6 650 49.1
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 2.9e-156 556.2 612 50.0
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 5.0e-156 555.4 637 47.9
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 8.6e-156 554.7 593 51.3
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 3.3e-155 552.7 514 56.4
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.6e-155 552.0 574 51.9
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 2.1e-154 550.1 637 49.5
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 6.1e-154 548.5 629 49.4
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.0e-153 547.7 629 48.2
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.4e-153 547.4 625 47.8
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.4e-153 547.4 607 51.4
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 4.0e-153 545.8 620 50.0
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.0e-152 543.5 603 49.8
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 7.5e-152 541.6 614 48.2
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 7.5e-152 541.6 638 48.6
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 2.2e-151 540.0 626 49.0
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 4.9e-151 538.9 631 46.8
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.4e-150 537.3 632 47.8
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.8e-150 537.0 646 48.0
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 2.4e-150 536.6 617 50.6
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 2.7e-149 533.1 643 46.0
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 5.0e-148 528.9 506 55.3
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 5.0e-148 528.9 615 48.8
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 8.6e-148 528.1 496 56.0
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.1e-147 527.7 615 49.1
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.5e-147 527.3 487 55.4
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.6e-146 523.9 608 47.5
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 2.3e-145 520.0 627 46.6
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 4.0e-145 519.2 514 54.1
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 5.2e-145 518.8 628 46.3
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.5e-144 517.3 636 46.5
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 5.8e-144 515.4 499 55.1
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 9.8e-144 514.6 505 53.9
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.9e-143 513.1 539 52.5
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 6.4e-143 511.9 641 47.3
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.4e-142 510.8 564 49.1
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 3.0e-140 503.1 504 52.0
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 8.6e-140 501.5 495 54.5
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 1.6e-138 497.3 638 44.5
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 2.8e-138 496.5 484 53.3
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 4.7e-138 495.7 480 54.0
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 1.8e-137 493.8 587 47.9
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.8e-137 493.8 682 44.3
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 7.5e-136 488.4 523 50.1
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.9e-134 483.8 524 50.4
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 2.3e-132 476.9 649 44.8
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.3e-132 476.9 606 46.5
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.2e-130 468.8 563 47.6
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.1e-129 468.0 625 45.0
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 4.1e-126 456.1 630 44.0
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.2e-125 454.5 484 50.0
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.6e-125 452.6 618 41.7
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 6.4e-119 432.2 521 47.0
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 2.4e-118 430.3 522 46.9
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.3e-114 417.9 464 50.0
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.0e-112 410.6 607 41.0
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.9e-111 406.8 426 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 1.4e-110 404.4 618 39.2
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 2.4e-110 403.7 595 40.8
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 3.5e-109 399.8 385 58.2
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 3.3e-107 393.3 489 44.4
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.2e-104 384.8 474 44.3
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.2e-104 384.8 474 44.3
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.4e-102 377.9 484 45.9
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 7.4e-99 365.5 463 44.7
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 2.5e-91 340.5 597 38.0
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.2e-74 284.3 609 34.2
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 6.9e-73 279.3 507 36.5
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 3.6e-69 266.9 654 30.7
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.8e-55 220.3 361 39.9
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.2e-53 215.3 413 32.7
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 8.8e-52 209.1 286 44.4
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 6.8e-44 183.0 199 45.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 4.9e-34 150.2 127 58.3
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 9.2e-25 119.4 196 35.2
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.5e-19 102.1 59 74.6
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.0e-15 89.4 159 35.8
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-08 65.5 43 67.4
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 5.6e-06 57.0 56 53.6


User provided reference genes

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