Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 0.0e+00 1318.5 679 100.0
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 0.0e+00 1318.5 679 100.0
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 0.0e+00 1318.5 679 100.0
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 9.0e-298 1026.5 684 81.4
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 7.9e-286 986.9 688 78.5
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 7.4e-284 980.3 710 77.0
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 3.7e-283 978.0 688 77.9
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 4.5e-281 971.1 709 76.6
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 3.0e-277 958.4 710 75.5
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 1.2e-273 946.4 683 77.3
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 1.1e-271 939.9 729 72.4
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 2.2e-259 899.0 694 73.2
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 5.3e-258 894.4 696 70.5
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 5.2e-245 851.3 652 74.2
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 4.1e-234 815.1 703 65.3
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 6.0e-217 758.1 545 78.0
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 6.2e-198 694.9 762 53.1
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.2e-196 690.6 759 52.6
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 3.8e-195 685.6 751 52.5
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.9e-194 683.3 742 54.3
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 2.4e-194 682.9 706 54.1
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.2e-194 682.2 751 52.5
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 7.1e-194 681.4 747 52.9
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.6e-193 680.2 698 55.9
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 2.1e-193 679.9 703 54.9
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 2.7e-193 679.5 753 52.5
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 2.8e-190 669.5 765 50.5
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.4e-189 667.2 771 50.7
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 2.4e-189 666.4 772 51.2
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 5.3e-189 665.2 738 51.8
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.5e-188 663.7 746 52.7
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 5.8e-188 661.8 764 51.0
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 9.9e-188 661.0 729 52.7
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 1.3e-187 660.6 764 49.7
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.8e-187 659.1 759 51.1
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 3.8e-187 659.1 738 52.3
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 6.4e-187 658.3 742 50.7
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 6.4e-187 658.3 739 51.4
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 7.1e-186 654.8 789 49.3
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 1.2e-185 654.1 769 50.2
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.2e-185 654.1 758 50.1
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 2.1e-185 653.3 727 51.3
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.7e-185 652.9 773 50.7
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.5e-185 652.5 816 49.0
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 3.5e-185 652.5 735 51.0
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 4.6e-185 652.1 745 50.7
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 2.3e-184 649.8 763 49.5
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 3.0e-184 649.4 745 50.2
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 6.6e-184 648.3 741 50.2
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 8.7e-184 647.9 758 49.5
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.5e-183 647.1 769 48.9
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 3.3e-183 646.0 768 49.9
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 7.3e-183 644.8 791 48.5
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.2e-182 641.7 814 48.6
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 8.1e-182 641.3 754 48.8
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 1.1e-181 641.0 745 50.3
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.8e-181 640.2 718 51.3
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 2.4e-181 639.8 738 50.4
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 7.6e-180 634.8 742 52.2
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.7e-179 633.6 762 48.7
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 3.8e-179 632.5 741 49.4
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 6.4e-179 631.7 764 48.8
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 8.4e-179 631.3 739 50.5
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.4e-178 629.8 461 73.1
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 4.2e-178 629.0 480 74.2
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 4.2e-178 629.0 744 50.0
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.6e-177 627.1 743 49.4
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 2.1e-177 626.7 763 47.8
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 4.6e-177 625.5 734 49.0
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 2.3e-176 623.2 753 47.9
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.5e-175 620.5 763 48.2
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 2.1e-174 616.7 744 48.1
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 3.7e-174 615.9 709 49.9
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.1e-173 614.4 690 51.2
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.8e-173 613.6 762 48.8
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 4.0e-173 612.5 713 50.6
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 9.0e-173 611.3 782 47.6
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 4.5e-172 609.0 750 48.1
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.7e-171 607.1 702 50.6
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 9.3e-170 601.3 789 46.6
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.2e-169 600.9 798 46.5
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 1.6e-169 600.5 765 46.9
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.8e-168 597.0 715 48.4
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 6.2e-166 588.6 780 46.2
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 6.2e-166 588.6 780 46.0
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 2.2e-163 580.1 711 47.8
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 1.3e-160 570.9 767 45.5
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 5.1e-160 568.9 765 45.5
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 3.7e-158 562.8 777 44.3
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 1.8e-157 560.5 782 43.5
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 2.5e-154 550.1 792 43.3
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 4.6e-153 545.8 726 43.4
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 9.4e-146 521.5 739 43.2
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.1e-145 518.8 646 49.4
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 1.8e-144 517.3 744 42.9
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.2e-142 510.4 925 39.5
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 5.9e-140 502.3 725 43.9
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 2.5e-138 496.9 714 42.6
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 8.2e-134 481.9 456 57.9
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 2.3e-128 463.8 622 46.5
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 5.4e-125 452.6 756 37.2
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.0e-123 448.4 698 39.1
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 2.9e-123 446.8 680 42.4
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.0e-120 438.3 602 45.0
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 2.3e-120 437.2 831 34.4
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 7.0e-117 425.6 419 55.4
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 4.0e-112 409.8 592 40.9
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 4.4e-103 379.8 488 49.2
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 4.9e-102 376.3 608 41.8
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.2e-94 350.9 486 46.1
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 3.3e-82 310.5 259 60.6
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 1.4e-77 295.0 464 43.1
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 8.1e-73 279.3 599 33.9
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 2.7e-60 237.7 368 41.0
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 3.0e-59 234.2 203 59.6
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 1.2e-44 185.7 208 54.8
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.1e-37 162.5 158 55.7
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.5e-37 161.4 152 54.6
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.6e-36 158.7 150 52.7
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.6e-36 158.7 150 54.0
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.3e-33 149.1 152 50.0
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 2.2e-33 148.3 114 67.5
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 2.2e-33 148.3 109 69.7
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 2.2e-33 148.3 161 49.1
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 7.7e-31 139.8 86 82.6
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 7.2e-29 133.3 108 60.2
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 7.9e-28 129.8 76 84.2
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.3e-26 124.4 113 55.8
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 7.7e-23 113.2 208 35.6
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-20 104.8 167 36.5
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.0e-19 102.8 106 52.8
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 1.4e-16 92.4 695 22.9
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.1e-16 91.3 75 58.7
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 5.0e-14 84.0 113 40.7
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 1.9e-13 82.0 93 48.4
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 6.3e-09 67.0 60 55.0
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 3.5e-07 61.2 486 22.8
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.7e-06 58.9 44 59.1
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 5.0e-06 57.4 62 48.4


User provided reference genes

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