Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 7.9e-52 206.8 105 100.0
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 7.4e-34 147.1 77 94.8
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 2.6e-31 138.7 82 86.6
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 2.6e-31 138.7 82 86.6
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.1e-29 133.3 82 82.9
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 4.2e-29 131.3 82 81.7
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 9.4e-29 130.2 82 81.7
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 2.7e-28 128.6 82 80.5
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 8.0e-28 127.1 82 79.3
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 3.0e-27 125.2 82 78.0
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 6.7e-27 124.0 82 78.0
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 1.1e-26 123.2 82 76.8
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 6.3e-25 117.5 78 76.9
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 2.4e-24 115.5 78 75.6
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 4.5e-23 111.3 86 72.1
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 4.2e-21 104.8 82 67.1
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 7.2e-21 104.0 82 65.9
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 2.7e-20 102.1 82 64.6
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.7e-20 102.1 82 64.6
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.7e-20 102.1 82 64.6
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 2.7e-20 102.1 82 64.6
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 3.4e-18 95.1 89 56.2
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 8.3e-17 90.5 82 57.3
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 4.1e-16 88.2 83 57.8
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.2e-15 86.7 84 57.1
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.2e-15 86.7 84 57.1
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 2.0e-15 85.9 82 57.3
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 2.7e-15 85.5 83 56.6
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.5e-15 85.1 84 56.0
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 3.5e-15 85.1 84 56.0
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 3.5e-15 85.1 83 56.6
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 5.9e-15 84.3 83 55.4
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 7.7e-15 84.0 84 54.8
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 1.0e-14 83.6 83 55.4
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 1.3e-14 83.2 84 53.6
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 1.3e-14 83.2 83 55.4
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 1.7e-14 82.8 83 55.4
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 1.7e-14 82.8 83 56.6
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 2.9e-14 82.0 84 54.8
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 5.0e-14 81.3 88 55.7
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 5.0e-14 81.3 79 55.7
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 5.0e-14 81.3 83 53.0
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 6.5e-14 80.9 68 63.2
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 8.5e-14 80.5 83 51.8
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.1e-13 80.1 83 51.8
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.1e-13 80.1 83 51.8
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.5e-13 79.7 80 55.0
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 1.5e-13 79.7 96 49.0
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 2.5e-13 79.0 79 54.4
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 2.5e-13 79.0 79 54.4
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 2.5e-13 79.0 79 54.4
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 4.2e-13 78.2 79 54.4
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 4.2e-13 78.2 94 47.9
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 4.2e-13 78.2 83 51.8
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 5.5e-13 77.8 81 53.1
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 7.2e-13 77.4 83 54.2
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 7.2e-13 77.4 81 53.1
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 2.1e-12 75.9 83 49.4
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 2.1e-12 75.9 83 50.6
BraA05t22495Z Brassica rapa HOM05D005838 ORTHO05D007177 2.7e-12 75.5 40 90.0
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 2.7e-12 75.5 84 48.8
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 3.6e-12 75.1 83 53.0
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 4.7e-12 74.7 83 50.6
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 6.1e-12 74.3 83 49.4
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 8.0e-12 73.9 84 52.4
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 1.0e-11 73.6 83 51.8
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 1.4e-11 73.2 82 48.8
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 1.8e-11 72.8 83 49.4
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 3.0e-11 72.0 83 48.2
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 4.0e-11 71.6 79 50.6
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 5.2e-11 71.2 84 47.6
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 6.8e-11 70.9 83 48.2
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 1.2e-10 70.1 83 49.4
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 1.2e-10 70.1 83 47.0
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 2.6e-10 68.9 83 48.2
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 3.4e-10 68.6 83 47.0
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 4.4e-10 68.2 58 58.6
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 5.7e-10 67.8 54 70.4
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 5.7e-10 67.8 79 46.8
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 5.7e-10 67.8 79 46.8
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 7.5e-10 67.4 83 48.2
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 9.8e-10 67.0 83 48.2
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 1.3e-09 66.6 84 45.2
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 2.2e-09 65.9 83 45.8
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 3.7e-09 65.1 79 44.3
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 4.9e-09 64.7 84 44.0
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 4.9e-09 64.7 82 43.9
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 4.9e-09 64.7 79 45.6
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 6.3e-09 64.3 82 43.9
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 6.3e-09 64.3 79 45.6
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 8.3e-09 63.9 84 42.9
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 1.4e-08 63.2 82 42.7
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 2.4e-08 62.4 82 46.3
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 3.1e-08 62.0 85 45.9
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 1.6e-07 59.7 85 44.7
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 3.5e-07 58.5 83 43.4
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 5.9e-07 57.8 82 39.0
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 7.7e-07 57.4 79 43.0
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 7.7e-07 57.4 85 42.4
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 1.0e-06 57.0 82 39.0
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 1.0e-06 57.0 83 41.0
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 1.3e-06 56.6 84 41.7
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 1.7e-06 56.2 83 39.8
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 2.9e-06 55.5 65 55.4
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 5.0e-06 54.7 84 40.5
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 6.6e-06 54.3 83 41.0
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 8.6e-06 53.9 84 39.3
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 8.6e-06 53.9 84 39.3
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 8.6e-06 53.9 84 39.3
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 8.6e-06 53.9 84 39.3


User provided reference genes

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