Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 4.1e-57 224.6 118 100.0
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 5.9e-56 220.7 118 98.3
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 1.0e-52 209.9 118 91.5
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.0e-52 209.9 118 91.5
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 1.0e-52 209.9 118 91.5
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 1.8e-52 209.1 119 94.1
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 2.0e-51 205.7 118 89.0
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 2.0e-51 205.7 118 89.0
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 3.4e-51 204.9 119 92.4
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 9.8e-51 203.4 118 87.3
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 2.9e-50 201.8 118 86.4
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 1.9e-49 199.1 119 89.1
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 1.9e-49 199.1 118 85.6
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 1.9e-46 189.1 118 83.9
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 1.9e-46 189.1 118 82.2
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 3.3e-46 188.3 118 83.9
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 3.6e-45 184.9 118 82.2
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 6.8e-44 180.6 118 79.7
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 7.3e-38 160.6 116 72.4
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 8.4e-34 147.1 116 66.4
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 2.4e-33 145.6 116 66.4
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 3.2e-33 145.2 116 66.4
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 4.1e-33 144.8 116 66.4
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 5.4e-33 144.4 116 64.7
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 5.4e-33 144.4 116 65.5
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 5.4e-33 144.4 116 66.4
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 1.2e-32 143.3 116 65.5
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 1.6e-32 142.9 116 65.5
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 1.6e-32 142.9 116 66.4
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 2.7e-32 142.1 116 63.8
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 3.5e-32 141.7 115 64.3
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 6.0e-32 141.0 109 67.9
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 7.8e-32 140.6 116 64.7
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 1.0e-31 140.2 116 65.5
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 1.0e-31 140.2 114 64.9
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 1.0e-31 140.2 114 64.9
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 1.7e-31 139.4 114 64.0
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 1.7e-31 139.4 116 64.7
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 2.3e-31 139.0 115 65.2
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 2.3e-31 139.0 116 62.9
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 3.0e-31 138.7 112 64.3
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.0e-31 138.7 115 62.6
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 3.0e-31 138.7 114 64.0
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 5.1e-31 137.9 116 63.8
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 8.6e-31 137.1 116 64.7
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 8.6e-31 137.1 114 64.0
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.1e-30 136.7 112 63.4
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 1.5e-30 136.3 116 63.8
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 2.5e-30 135.6 119 65.5
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 2.5e-30 135.6 116 62.9
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 7.3e-30 134.0 109 65.1
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 9.6e-30 133.7 112 62.5
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 9.6e-30 133.7 116 59.5
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 9.6e-30 133.7 116 62.1
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.6e-29 132.9 116 62.1
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 2.1e-29 132.5 116 62.1
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 2.1e-29 132.5 116 62.1
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 2.1e-29 132.5 114 64.0
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 6.2e-29 131.0 116 62.1
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 6.2e-29 131.0 109 61.5
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 8.1e-29 130.6 116 60.3
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 8.1e-29 130.6 111 63.1
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 8.1e-29 130.6 115 60.0
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.8e-28 129.4 113 61.9
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 1.8e-28 129.4 118 60.2
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 1.8e-28 129.4 118 60.2
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 3.1e-28 128.6 115 59.1
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 4.0e-28 128.3 101 65.3
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 5.2e-28 127.9 116 57.8
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 6.9e-28 127.5 116 56.9
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 8.9e-28 127.1 113 61.1
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 8.9e-28 127.1 115 60.0
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 8.9e-28 127.1 109 60.6
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 8.9e-28 127.1 115 56.5
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 1.5e-27 126.3 115 58.3
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 2.0e-27 125.9 115 57.4
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 2.6e-27 125.6 115 58.3
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 4.4e-27 124.8 116 58.6
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 7.6e-27 124.0 113 57.5
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 1.3e-26 123.2 116 59.5
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 1.1e-25 120.2 116 56.9
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 1.4e-25 119.8 116 53.4
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 1.9e-25 119.4 116 56.0
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 2.4e-25 119.0 109 58.7
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 3.2e-25 118.6 107 57.9
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 4.2e-25 118.2 116 55.2
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 9.3e-25 117.1 115 53.9
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 7.8e-24 114.0 116 51.7
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 8.7e-23 110.5 114 50.0
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 1.5e-22 109.8 105 54.3
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 4.3e-22 108.2 94 60.6
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 7.3e-22 107.5 114 49.1
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 1.6e-21 106.3 114 49.1
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 3.6e-21 105.1 91 59.3
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 4.5e-19 98.2 54 96.3
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 7.6e-19 97.4 72 66.7
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 9.3e-17 90.5 120 40.8
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 2.1e-16 89.4 73 60.3
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 7.9e-16 87.4 111 45.0
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 1.8e-15 86.3 71 60.6
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 3.0e-15 85.5 107 45.8
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 6.7e-15 84.3 71 57.7
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 1.9e-14 82.8 109 42.2
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 2.8e-13 79.0 46 84.8
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 4.0e-12 75.1 67 56.7
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 9.9e-11 70.5 106 41.5
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 1.3e-10 70.1 73 47.9
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 5.5e-09 64.7 86 46.5
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 1.3e-07 60.1 109 36.7


User provided reference genes

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