Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34102H Brassica oleracea HOM05D000083 ORTHO05D003582 1.5e-68 262.7 133 100.0
C05p54340 Brassica napus HOM05D000083 ORTHO05D003582 7.9e-65 250.4 126 100.0
Thhalv10019926m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 6.5e-51 204.1 136 82.4
BcaB04g18769 Brassica carinata HOM05D000083 ORTHO05D003582 8.5e-51 203.8 136 82.4
A03p38250 Brassica napus HOM05D000083 ORTHO05D003582 8.5e-51 203.8 136 82.4
BolC3t16908H Brassica oleracea HOM05D000083 ORTHO05D003582 8.5e-51 203.8 136 82.4
BraA03t12978Z Brassica rapa HOM05D000083 ORTHO05D003582 8.5e-51 203.8 136 82.4
AL3G25440 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 2.5e-50 202.2 136 81.6
AT3G13530 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 2.5e-50 202.2 136 81.6
Carub.0003s1301 Capsella rubella HOM05D000083 ORTHO05D003582 2.5e-50 202.2 136 81.6
BcaC01g03989 Brassica carinata HOM05D000083 ORTHO05D003582 3.2e-50 201.8 136 81.6
C03p46440 Brassica napus HOM05D000083 ORTHO05D003582 3.2e-50 201.8 136 81.6
Sp3g11740 Schrenkiella parvula HOM05D000083 ORTHO05D003582 3.2e-50 201.8 136 81.6
CARHR088200 Cardamine hirsuta HOM05D000083 ORTHO05D003582 9.4e-50 200.3 136 80.9
Aa31LG8G730 Aethionema arabicum HOM05D000083 ORTHO05D003582 1.6e-49 199.5 136 80.9
Thhalv10019902m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 2.7e-49 198.7 136 80.1
C03p43230 Brassica napus HOM05D000083 ORTHO05D003582 4.7e-49 198.0 136 80.1
AT3G07980 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 7.9e-49 197.2 136 80.1
A03p35590 Brassica napus HOM05D000083 ORTHO05D003582 1.0e-48 196.8 136 79.4
BraA03t12735Z Brassica rapa HOM05D000083 ORTHO05D003582 1.0e-48 196.8 136 79.4
BcaB03g11558 Brassica carinata HOM05D000083 ORTHO05D003582 1.4e-48 196.4 136 79.4
AL3G19360 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 1.8e-48 196.1 136 79.4
BolC3t16592H Brassica oleracea HOM05D000083 ORTHO05D003582 3.0e-48 195.3 136 79.4
Sp3g06890 Schrenkiella parvula HOM05D000083 ORTHO05D003582 3.9e-48 194.9 136 79.4
CARHR082720 Cardamine hirsuta HOM05D000083 ORTHO05D003582 6.7e-48 194.1 136 78.7
Carub.0003s0756 Capsella rubella HOM05D000083 ORTHO05D003582 8.8e-48 193.7 136 79.4
THA.LOC104822679 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 2.0e-47 192.6 136 77.9
Aa31LG10G1090 Aethionema arabicum HOM05D000083 ORTHO05D003582 6.3e-46 187.6 136 77.2
Ah.01g012890 Amaranthus hybridus HOM05D000083 ORTHO05D003582 4.1e-45 184.9 136 75.0
BraA01t04049Z Brassica rapa HOM05D000083 ORTHO05D003582 9.1e-45 183.7 136 75.7
EL10Ac9g22930 Beta vulgaris HOM05D000083 ORTHO05D003582 1.2e-44 183.3 136 75.0
Nn7g37822 Nelumbo nucifera HOM05D000083 ORTHO05D003582 2.0e-44 182.6 136 73.5
Sc06g0007920 Simmondsia chinensis HOM05D000083 ORTHO05D003582 2.0e-44 182.6 136 73.5
A01p40080 Brassica napus HOM05D000083 ORTHO05D003582 3.5e-44 181.8 136 75.0
TWI53G2094 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 3.5e-44 181.8 136 74.3
MELO3C024030.2 Cucumis melo HOM05D000083 ORTHO05D003582 5.9e-44 181.0 136 74.3
CsaV3_3G031470 Cucumis sativus L. HOM05D000083 ORTHO05D003582 5.9e-44 181.0 136 74.3
QL03p043964 Quercus lobata HOM05D000083 ORTHO05D003582 7.7e-44 180.6 136 73.5
Thecc.02G160900 Theobroma cacao HOM05D000083 ORTHO05D003582 7.7e-44 180.6 136 75.0
Lj3C850G18 Lonicera japonica HOM05D000083 ORTHO05D003582 1.0e-43 180.3 136 74.3
BcaB04g20987 Brassica carinata HOM05D000083 ORTHO05D003582 1.3e-43 179.9 136 75.0
C01p51560 Brassica napus HOM05D000083 ORTHO05D003582 1.3e-43 179.9 136 75.0
BolC1t05099H Brassica oleracea HOM05D000083 ORTHO05D003582 1.3e-43 179.9 136 75.0
CANSAT64G2172 Cannabis sativa HOM05D000083 ORTHO05D003582 1.7e-43 179.5 136 73.5
TAR629G3380 Trochodendron aralioides HOM05D000083 ORTHO05D003582 1.7e-43 179.5 136 72.8
Gohir.A03G164300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 2.2e-43 179.1 136 75.0
Hund24289 Selenicereus undatus HOM05D000083 ORTHO05D003582 2.2e-43 179.1 136 72.8
AUR62015218 Chenopodium quinoa HOM05D000083 ORTHO05D003582 2.9e-43 178.7 136 73.5
AUR62017682 Chenopodium quinoa HOM05D000083 ORTHO05D003582 2.9e-43 178.7 136 73.5
Gohir.A01G013000 Gossypium hirsutum HOM05D000083 ORTHO05D003582 2.9e-43 178.7 136 74.3
Gohir.D01G014300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 2.9e-43 178.7 136 74.3
Gorai.002G016000 Gossypium raimondii HOM05D000083 ORTHO05D003582 2.9e-43 178.7 136 74.3
Dinv11712 Davidia involucrata HOM05D000083 ORTHO05D003582 6.5e-43 177.6 136 72.8
ECA246G2960 Erigeron canadensis HOM05D000083 ORTHO05D003582 6.5e-43 177.6 136 72.1
Migut.E00701 Erythranthe guttata HOM05D000083 ORTHO05D003582 6.5e-43 177.6 136 72.1
FvH4_4g36790 Fragaria vesca HOM05D000083 ORTHO05D003582 6.5e-43 177.6 136 73.5
Glyma.11G101700 Glycine max HOM05D000083 ORTHO05D003582 6.5e-43 177.6 136 72.8
Gohir.D02G187600 Gossypium hirsutum HOM05D000083 ORTHO05D003582 6.5e-43 177.6 136 74.3
Lj3g0012190 Lotus japonicus HOM05D000083 ORTHO05D003582 6.5e-43 177.6 136 72.8
Rhsim09G0073200 Rhododendron simsii HOM05D000083 ORTHO05D003582 6.5e-43 177.6 136 72.8
RcHm_v2.0_Chr4g0446521 Rosa chinensis HOM05D000083 ORTHO05D003582 6.5e-43 177.6 136 73.5
Ca_19030_v3 Cicer arietinum L. HOM05D000083 ORTHO05D003582 8.5e-43 177.2 136 72.1
DCAR_030398 Daucus carota HOM05D000083 ORTHO05D003582 8.5e-43 177.2 136 72.1
Phvul.011G030800 Phaseolus vulgaris HOM05D000083 ORTHO05D003582 8.5e-43 177.2 136 72.8
Psat7g176440 Pisum sativum HOM05D000083 ORTHO05D003582 8.5e-43 177.2 136 72.1
TPR.G32329 Trifolium pratense HOM05D000083 ORTHO05D003582 8.5e-43 177.2 136 72.1
GSVIVG01012031001 Vitis vinifera HOM05D000083 ORTHO05D003582 8.5e-43 177.2 136 73.5
Ah.01g001600 Amaranthus hybridus HOM05D000083 ORTHO05D003582 1.1e-42 176.8 138 70.3
FAN07G1039 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.1e-42 176.8 136 72.8
FAN17G2779 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.1e-42 176.8 145 69.7
Medtr4g075410 Medicago truncatula HOM05D000083 ORTHO05D003582 1.1e-42 176.8 136 72.1
PGR044G0594 Punica granatum HOM05D000083 ORTHO05D003582 1.1e-42 176.8 136 72.8
TWI74G1512 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 1.1e-42 176.8 136 73.5
THA.LOC104810328 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 1.4e-42 176.4 136 72.1
arahy.Tifrunner.gnm1.ann1.FSDW2L Arachis hypogaea HOM05D000083 ORTHO05D003582 2.5e-42 175.6 136 72.1
arahy.Tifrunner.gnm1.ann1.ZIJB47 Arachis hypogaea HOM05D000083 ORTHO05D003582 2.5e-42 175.6 136 72.1
Duzib132G0002 Durio zibethinus HOM05D000083 ORTHO05D003582 2.5e-42 175.6 136 72.8
Glyma.12G027600 Glycine max HOM05D000083 ORTHO05D003582 2.5e-42 175.6 136 72.1
Gorai.005G210100 Gossypium raimondii HOM05D000083 ORTHO05D003582 2.5e-42 175.6 136 73.5
Oeu027907.6 Olea europaea HOM05D000083 ORTHO05D003582 2.5e-42 175.6 136 72.1
Ciclev10030510m.g Citrus clementina HOM05D000083 ORTHO05D003582 3.2e-42 175.3 136 72.8
PSO063G5474 Papaver somniferum HOM05D000083 ORTHO05D003582 3.2e-42 175.3 136 72.1
CiPaw.04G139600 Carya illinoinensis HOM05D000083 ORTHO05D003582 4.2e-42 174.9 136 73.5
Duzib248G1611 Durio zibethinus HOM05D000083 ORTHO05D003582 4.2e-42 174.9 136 72.8
Eucgr.J00858 Eucalyptus grandis HOM05D000083 ORTHO05D003582 4.2e-42 174.9 136 72.1
HanXRQChr17g0540841 Helianthus annuus HOM05D000083 ORTHO05D003582 4.2e-42 174.9 136 71.3
Potri.005G094200 Populus trichocarpa HOM05D000083 ORTHO05D003582 5.5e-42 174.5 136 73.5
SalBow6G1016 Salvia bowleyana HOM05D000083 ORTHO05D003582 5.5e-42 174.5 136 71.3
unitig_22.g5627 Utricularia gibba HOM05D000083 ORTHO05D003582 5.5e-42 174.5 136 70.6
vmacro10904 Vaccinium macrocarpon HOM05D000083 ORTHO05D003582 5.5e-42 174.5 136 71.3
Aqoxy7G03614 Aquilegia oxysepala HOM05D000083 ORTHO05D003582 7.2e-42 174.1 136 71.3
CAN.G624.28 Capsicum annuum HOM05D000083 ORTHO05D003582 7.2e-42 174.1 136 72.1
FAN12G3263 Fragaria x ananassa HOM05D000083 ORTHO05D003582 7.2e-42 174.1 145 69.0
HanXRQChr06g0172001 Helianthus annuus HOM05D000083 ORTHO05D003582 7.2e-42 174.1 136 71.3
Peaxi162Scf00363g00731 Petunia axillaris HOM05D000083 ORTHO05D003582 7.2e-42 174.1 136 72.1
Prupe.1G346000 Prunus persica HOM05D000083 ORTHO05D003582 7.2e-42 174.1 136 72.8
Solyc11g033270.2 Solanum lycopersicum HOM05D000083 ORTHO05D003582 7.2e-42 174.1 136 72.1
PGSC0003DMG400007647 Solanum tuberosum HOM05D000083 ORTHO05D003582 7.2e-42 174.1 136 72.1
Peaxi162Scf01172g00034 Petunia axillaris HOM05D000083 ORTHO05D003582 9.4e-42 173.7 136 72.1
VMungo1383G1323 Vigna mungo HOM05D000083 ORTHO05D003582 9.4e-42 173.7 136 71.3
Lsat_1_v5_gn_3_33541 Lactuca sativa HOM05D000083 ORTHO05D003582 1.2e-41 173.3 136 71.3
PSO782G1916 Papaver somniferum HOM05D000083 ORTHO05D003582 1.2e-41 173.3 136 71.3
MD13G1006900 Malus domestica HOM05D000083 ORTHO05D003582 1.6e-41 172.9 136 72.8
MD16G1000900 Malus domestica HOM05D000083 ORTHO05D003582 1.6e-41 172.9 136 72.8
Manes.11G101900 Manihot esculenta HOM05D000083 ORTHO05D003582 1.6e-41 172.9 136 72.8
Sabra05G0078000 Salix brachista HOM05D000083 ORTHO05D003582 1.6e-41 172.9 136 72.8
ATR0326G043 Amborella trichopoda HOM05D000083 ORTHO05D003582 2.1e-41 172.6 136 71.3
Sed0020503 Sechium edule HOM05D000083 ORTHO05D003582 2.1e-41 172.6 136 72.8
DCAR_023443 Daucus carota HOM05D000083 ORTHO05D003582 2.7e-41 172.2 136 69.1
Medtr4g074875 Medicago truncatula HOM05D000083 ORTHO05D003582 2.7e-41 172.2 136 70.6
Cc00_g03930 Coffea canephora HOM05D000083 ORTHO05D003582 3.6e-41 171.8 136 72.1
Sopen11g015750 Solanum pennellii HOM05D000083 ORTHO05D003582 3.6e-41 171.8 136 71.3
MSTRG.2058 Avicennia marina HOM05D000083 ORTHO05D003582 6.1e-41 171.0 136 71.3
Os04g0660500 Oryza sativa ssp. japonica HOM05D000083 ORTHO05D003582 8.0e-41 170.6 136 69.9
Potri.007G070100 Populus trichocarpa HOM05D000083 ORTHO05D003582 8.0e-41 170.6 136 72.1
Zm00001eb067530 Zea mays HOM05D000083 ORTHO05D003582 8.0e-41 170.6 136 69.1
Haze_11721 Corylus avellana HOM05D000083 ORTHO05D003582 1.0e-40 170.2 155 64.5
Gohir.A12G134300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 1.8e-40 169.5 136 67.6
Gohir.D12G137900 Gossypium hirsutum HOM05D000083 ORTHO05D003582 1.8e-40 169.5 136 67.6
Gorai.008G149400 Gossypium raimondii HOM05D000083 ORTHO05D003582 1.8e-40 169.5 136 67.6
Lalb_Chr19g0139361 Lupinus albus HOM05D000083 ORTHO05D003582 1.8e-40 169.5 136 68.4
HPP92_002088 Vanilla planifolia HOM05D000083 ORTHO05D003582 2.3e-40 169.1 136 70.6
HPP92_002093 Vanilla planifolia HOM05D000083 ORTHO05D003582 2.3e-40 169.1 136 70.6
DCAR_004230 Daucus carota HOM05D000083 ORTHO05D003582 3.0e-40 168.7 136 68.4
Sabra07G0058700 Salix brachista HOM05D000083 ORTHO05D003582 3.0e-40 168.7 136 71.3
TAR371G0617 Trochodendron aralioides HOM05D000083 ORTHO05D003582 3.0e-40 168.7 136 70.6
Zm00001eb432730 Zea mays HOM05D000083 ORTHO05D003582 3.9e-40 168.3 136 69.1
A05p35920 Brassica napus HOM05D000083 ORTHO05D003582 1.1e-39 166.8 110 80.9
BraA05t22398Z Brassica rapa HOM05D000083 ORTHO05D003582 1.1e-39 166.8 110 80.9
ClCG10G011890 Citrullus lanatus HOM05D000083 ORTHO05D003582 1.1e-39 166.8 173 58.4
SGA_v2.0_scaffold99G29461 Striga asiatica HOM05D000083 ORTHO05D003582 7.4e-39 164.1 173 57.2
CDE04G1078 Ceratophyllum demersum HOM05D000083 ORTHO05D003582 1.7e-38 162.9 136 68.4
Lalb_Chr10g0095051 Lupinus albus HOM05D000083 ORTHO05D003582 1.7e-38 162.9 136 67.6
Sabra07G0058200 Salix brachista HOM05D000083 ORTHO05D003582 2.8e-38 162.2 148 64.9
SHI17990 Sapria himalayana HOM05D000083 ORTHO05D003582 2.8e-38 162.2 136 67.6
BcaB03g11553 Brassica carinata HOM05D000083 ORTHO05D003582 1.8e-37 159.5 94 87.2
Oeu033540.1 Olea europaea HOM05D000083 ORTHO05D003582 7.0e-37 157.5 124 71.0
DCAR_026911 Daucus carota HOM05D000083 ORTHO05D003582 1.3e-35 153.3 138 65.2
SEGI_09729 Sequoiadendron giganteum HOM05D000083 ORTHO05D003582 1.5e-34 149.8 136 63.2
Nitab4.5_0011898g0010 Nicotiana tabacum HOM05D000083 ORTHO05D003582 9.4e-34 147.1 103 75.7
Hma1.2p1_0005F.1_g004230 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 3.6e-33 145.2 90 82.2
Nitab4.5_0002113g0210 Nicotiana tabacum HOM05D000083 ORTHO05D003582 3.6e-33 145.2 94 80.9
Pp3c15_11760 Physcomitrium patens HOM05D000083 ORTHO05D003582 8.8e-32 140.6 136 59.6
Lalb_Chr03g0024811 Lupinus albus HOM05D000083 ORTHO05D003582 2.0e-31 139.4 92 77.2
SEGI_08600 Sequoiadendron giganteum HOM05D000083 ORTHO05D003582 3.4e-31 138.7 136 60.3
Mapoly0140s0044 Marchantia polymorpha HOM05D000083 ORTHO05D003582 1.7e-30 136.3 136 58.1
Pp3c15_25040 Physcomitrium patens HOM05D000083 ORTHO05D003582 2.8e-30 135.6 136 60.3
Pp3c9_25590 Physcomitrium patens HOM05D000083 ORTHO05D003582 6.3e-30 134.4 140 57.9
SMO198G0032 Selaginella moellendorffii HOM05D000083 ORTHO05D003582 3.1e-29 132.1 133 56.4
CBR_g38927 Chara braunii HOM05D000083 ORTHO05D003582 4.1e-21 105.1 136 48.5
PRCOL_00002034 Prasinoderma coloniale HOM05D000083 ORTHO05D003582 1.6e-20 103.2 136 44.1
Atru.chr11.1179 Acer truncatum HOM05D000083 ORTHO05D003582 1.0e-16 90.5 59 81.4
AagrBONN_evm.TU.Sc2ySwM_344.4764 Anthoceros agrestis HOM05D000083 ORTHO05D003582 2.9e-11 72.4 91 53.8
Cpa.g.sc119.47 Carica papaya HOM05D000083 ORTHO05D003582 2.9e-11 72.4 42 85.7
COL.COLO4_08996 Corchorus olitorius HOM05D000083 ORTHO05D003582 2.9e-11 72.4 42 85.7
CBR_g66805 Chara braunii HOM05D000083 ORTHO05D003582 3.3e-10 68.9 129 36.4
HPP92_002070 Vanilla planifolia HOM05D000083 ORTHO05D003582 7.3e-10 67.8 42 76.2
Zm00001eb339770 Zea mays HOM05D000083 ORTHO05D003582 1.6e-09 66.6 39 76.9
Cfa022394 Carpinus fangiana HOM05D000083 ORTHO05D003582 4.7e-09 65.1 126 34.9


User provided reference genes

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